| Literature DB >> 32933093 |
Igor Zlatskiy1,2, Tatiana Pleteneva1, Alexander Skripnikov3, Tatiana Grebennikova1,4, Tatiana Maksimova1, Nadine Antipova1,3, Olga Levitskaya1, Mariia Makarova1, Igor Selivanenko5, Anton Syroeshkin1.
Abstract
The kinetics of biological reactions depends on the deuterium/protium (D/H) ratio in water. In this work, we describe the kinetic model of biocatalytic reactions in living organisms depending on the D/H ratio. We show that a change in the lifetime or other characteristics of the vital activity of some organisms in response to a decrease or increase in the content of deuterium in the environment can be a sign of a difference in taxons. For animals-this is a curve with saturation according to the Gauss's principle, for plants-it is the Poisson dependence, for bacteria a weakly saturated curve with a slight reaction to the deuterium/protium ratio toward increasing deuterium. The biological activity of the aquatic environment with reduced, elevated, and natural concentrations of deuterium is considered. The results of the study are presented in different vital indicators of some taxons: the bacteria kingdom-the colony forming units (CFU) index (Escherichia coli); animals-the activation energy of the death of ciliates (Spirostomum ambiguum), embryogenesis of fish (Brachydanio rerio); plants-germination and accumulation of trace elements Callisia fragrans L., sprouting of gametophores and peptidomics of moss Physcomitrella patens. It was found that many organisms change their metabolism and activity, responding to both high and low concentrations of deuterium in water.Entities:
Keywords: biocatalytic scheme; deuterated water; deuterium-depleted water; isotopic composition of water; kinetic model; living organisms
Mesh:
Substances:
Year: 2020 PMID: 32933093 PMCID: PMC7571008 DOI: 10.3390/molecules25184173
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Some physico-chemical properties of water with different heavy isotope contents (T = 20.00 ± 0.04 °C) [8]. (*—according to the LALLS method data).
| No. | Physico-Chemical Parameter | Water D/H = 4 ± 0.9 ppm (ddw) | High-Resistance Water of Natural Isotopic Composition | D2O |
|---|---|---|---|---|
| 1 | Surface Tension σ, mN/m | 75.172 | 72.860 | 67.800 |
| 2 | Kinematic Viscosity, mm2/s | 0.987 | 1.012 | 1.274 |
| 3 | Density *, g/cm3 | 0.9969 | 0.9982 | 1.1042 |
| 4 | Freezing Point, T °C | −1.5 | 0 | +3.8 |
| 5 | Dl—self-diffusion coefficient, | 0.63 | 0.46 | 0.52 |
| 6 | Spin-spin Relaxation Time of the Water Proton t, s | 0.347 | 2.000 | − |
| 7 | Volume concentration * of density inhomogeneities, vc (%) | 0.20 | 1.00 | 0.18 |
| 8 | Obscuration * due to laser light scattering, laserobscuration (λ = 633 nm) | 0.003 | 0.020 | 0.005 |
The influence of the changed D/H isotopic composition in water on the values of vital indicators of different taxonomic groups of organisms. (Control—indicators in water with the natural ratio of deuterium/protium (140 ppm); *—death).
| D/H, ppm | Organisms, Indicators | ||||
|---|---|---|---|---|---|
| Bacteria | Plants | Animals | |||
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| ||
| 10 | 100% | 70% | 4 × 103% | 5% | 80% |
| 140 | 100% | 100% | 100% | 100% | 100% |
| D2O | 35% | 0% * | 0% * | 1% | 50% |
Zinc accumulation factor (k) in C. fragrans leaves after incubation with zinc glycinate solutions in ordinary MilliQ water (D/H = 142 ppm) and (ddw) (D/H = 12 ppm). k = [Zn] after incubation with Zn (II) glycinate/[Zn] before incubation.(where [Zn] is total concentration of the element). Measurements were carried out for the lower (in the petiole) part of the leaf blade. Data for a seven-day incubation are presented. *—the value corresponds to the absolute content of the element Zn—1.5 mg per 1 g for dry weight.
| Element | k | |
|---|---|---|
|
|
| |
| Zn | 40 ± 10 | 160 ± 10 * |
| Mn | 1 ± 0.3 | 0.7 ± 0.2 |
| Fe | 3 ± 1 | 10 ± 2 * |
Changes in the moss peptidom during the sprouting on DDW (peptide names are given according to international nomenclature [36]). “+”—present; “−”—absent.
| Item | Peptide Code and Characterization of the Proteins | Sprouting on MilliQ | Sprouting on DDW |
|---|---|---|---|
| 1 | A9RAW3_PHYPA Uncharacterized protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_158431 PE = 3; SV = 1 | + | − |
| 2 | A9REY5_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_113064 PE = 3; SV = 1 | + | − |
| 3 | A9RFC9_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_113309 PE = 3; SV = 1; D2XNF3 | + | − |
| 4 | A9RJM3_PHYPA NADH-cytochrome b5 reductase OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_115361 PE = 3; SV = 1 | + | − |
| 5 | A9RKT5_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_175733 PE = 4; SV = 1; A9S7I6 | + | − |
| 6 | A9RLI4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN = PHYPADRAFT_203665 PE = 4; SV = 1 | + | − |
| 7 | A9RQ53_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_62373 PE = 4; SV = 1 | + | − |
| 8 | A9SNF4_PHYPA Serine/threonine-protein phosphatase OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_186751 PE = 3; SV = 1; A9S099 | + | − |
| 9 | A9RR01_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_160535 PE = 4; SV = 1 | + | − |
| 10 | A9RWR3_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_206327 PE = 4; SV = 1 | + | − |
| 11 | A9RXH5_PHYPA Predicted protein (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_20993 PE = 4; SV = 1; A9RXH0 | + | − |
| 12 | A9RXS6_PHYPA ATPase ASNA1 homolog OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_206681 PE = 3; SV = 1 | + | − |
| 13 | A9RY14_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_161687 PE = 3; SV = 1 | + | − |
| 14 | A9RZM5_PHYPA Malic enzyme OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_179808 PE = 3; SV = 1 | + | − |
| 15 | A9S3P3_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_123533 PE = 4; SV = 1; Q05KM6 | + | − |
| 16 | A9S3W0_PHYPA Predicted protein (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_5967 PE = 3; SV = 1 | + | − |
| 17 | A9SVS7_PHYPA Predicted protein (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_19427 PE = 4; SV = 1; A9S6D6 | + | − |
| 18 | A9S6F0_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_163089 PE = 4; SV = 1 | + | − |
| 19 | A9SDC7_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_183678 PE = 4; SV = 1 | + | − |
| 20 | A9SE00_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_164448 PE = 4; SV = 1 | + | − |
| 21 | A9SE49_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_211358 PE = 4; SV = 1 | + | − |
| 22 | A9SJI0_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_213039 PE = 3; SV = 1 | + | − |
| 23 | A9SNN0_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_186902 PE = 4; SV = 1 | + | − |
| 24 | A9SPQ9_PHYPA Acyl carrier protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_110052 PE = 3; SV = 1 | + | − |
| 25 | A9SRJ7_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_134103 PE = 4; SV = 1 | + | − |
| 26 | A9SUV8_PHYPA Beta-amylase OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_107034 PE = 3; SV = 1 | + | − |
| 27 | A9SZ47_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_217333 PE = 3; SV = 1 | + | − |
| 28 | A9SZE9_PHYPA Xyloglucan endotransglucosylase/hydrolase OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_137834 PE = 3; SV = 1 | + | − |
| 29 | A9SZY0_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_167354 PE = 4; SV = 1 | + | − |
| 30 | A9T1V0_PHYPA Predicted protein (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_138980 PE = 4; SV = 1 | + | − |
| 31 | A9T469_PHYPA 40S ribosomal protein S8 OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_191463 PE = 3; SV = 1 | + | − |
| 32 | A9T7K4_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_110253 PE = 3; SV = 1 | + | − |
| 33 | A9TE26_PHYPA Cysteine proteinase inhibitor OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_144213 PE = 3; SV = 1 | + | − |
| 34 | A9TF90_PHYPA Predicted protein (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_144707 PE = 4; SV = 1 | + | − |
| 35 | A9THA6_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_222325 PE = 4; SV = 1 | + | − |
| 36 | A9THL7_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_170119 PE = 4; SV = 1 | + | − |
| 37 | A9THY4_PHYPA Predicted protein (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_6064 PE = 4; SV = 1 | + | − |
| 38 | A9TJ89_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_146390 PE = 3; SV = 1 | + | − |
| 39 | A9TLJ0_PHYPA Carboxypeptidase OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_147350 PE = 3; SV = 1 | + | − |
| 40 | A9TMY7_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_223748 PE = 3; SV = 1 | + | − |
| 41 | A9TPH1_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_224194 PE = 4; SV = 1; A9U2L4 | + | − |
| 42 | A9TQB7_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_148985 PE = 3; SV = 1 | + | − |
| 43 | A9TUQ5_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_108826 PE = 4; SV = 1; A9T4Q4 | + | − |
| 44 | Q8GU37_PHYPA Putative phosphatidylcholine-sterol acetyltransferase (Fragment) OS = Physcomitrella patens subsp. patens PE = 2; SV = 1; A9TVL8 | + | − |
| 45 | A9TY79_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_199405 PE = 3; SV = 1 | + | − |
| 46 | A9U536_PHYPA Predicted protein (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_23950 PE = 4; SV = 1; A9U5D9 | + | − |
| 47 | Q1XGA6_PHYPA Cytochrome b OS = Physcomitrella patens subsp. patens GN = cob PE = 3; SV = 1 | + | − |
| 48 | RR19_PHYPA 30S ribosomal protein S19, chloroplastic OS = Physcomitrella patens subsp. patens GN = rps19; PE = 3; SV = 1 | − | + |
| 49 | A9SDA4_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_211044 PE = 3; SV = 1; A9TQF6 | − | + |
| 50 | A9SE53_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_78151 PE = 4 SV = 1; A9SUI0 | − | + |
| 51 | A9RXH3_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_121056 PE = 4; SV = 1 | − | + |
| 52 | A9RQE4_PHYPA 40S ribosomal protein S30 (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_118030 PE = 3; SV = 1; A9RQD4 | − | + |
| 53 | A9SBL7_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_183147 PE = 4; SV = 1 | − | + |
| 54 | A9SF90_PHYPA Predicted protein (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_128900 PE = 4; SV = 1 | − | + |
| 55 | A9T230_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_233069 PE = 1; SV = 1 | − | + |
| 56 | A9SWB0_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_136325 PE = 4; SV = 1 | − | + |
| 57 | A9SUQ5_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_84227 PE = 4; SV = 1 | − | + |
| 58 | A9T6P0_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_168383 PE = 4; SV = 1 | − | + |
| 59 | Q1L642_PHYPA Plasma membrane aquaporin OS = Physcomitrella patens subsp. patens GN = PIP1;1 PE = 3; SV = 1; A9RBK8 | − | + |
| 60 | A9SKG1_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_131352 PE = 4; SV = 1 | − | + |
| 61 | A9RGM6_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_114028 PE = 3; SV = 1 | − | + |
| 62 | RK14_PHYPA 50S ribosomal protein L14, chloroplastic OS = Physcomitrella patens subsp. patens GN = rpl14; PE = 3; SV = 1 | − | + |
| 63 | A9SG27_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_129247 PE = 3; SV = 1; A9RZ43 | − | + |
| 64 | A9TEN6_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_169641 PE = 4; SV = 1 | − | + |
| 65 | A9SZZ7_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_217573 PE = 4; SV = 1 | − | + |
| 66 | A9RS97_PHYPA Predicted protein (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_118507 PE = 4; SV = 1; A9SZB8 | − | + |
| 67 | A9SKW2_PHYPA Peptidylprolyl isomerase (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_49268 PE = 4; SV = 1; A9TGA1 | − | + |
| 68 | A9U1T5_PHYPA Predicted protein (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_5105 PE = 4; SV = 1 | − | + |
| 69 | A9U1Y5_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_173229 PE = 4; SV = 1 | − | + |
| 70 | A9U341_PHYPA Predicted protein (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_8489 PE = 4; SV = 1 | − | + |
| 71 | A9T9M8_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_142289 PE = 3; SV = 1 | − | + |
| 72 | A9U096_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_153718 PE = 4; SV = 1; A9SU96 | − | + |
| 73 | A9T027_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_86316 PE = 3; SV = 1 | − | + |
| 74 | A9TA00_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_220250 PE = 3; SV = 1 | − | + |
| 75 | Q5KSB5_PHYPA Germin-like protein OS = Physcomitrella patens subsp. patens GN = PpGLP6 PE = 2; SV = 1 | − | + |
| 76 | A9S3L2_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_180874 PE = 3; SV = 1 | − | + |
| 77 | A9RGB1_PHYPA Uncharacterized protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_104506 PE = 3; SV = 1 | − | + |
| 78 | A9S1H8_PHYPA Predicted protein (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_44384 PE = 4; SV = 1; A9SQA7 | − | + |
| 79 | A9TNC3_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_196700 PE = 4; SV = 1 | − | + |
| 80 | A9RY38_PHYPA Purple acid phosphatase OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_121352 PE = 3; SV = 1 | − | + |
| 81 | A9TJF9_PHYPA Predicted protein (Fragment) OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_33800 PE = 4; SV = 1 | − | + |
| 82 | A9SKS5_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_186065 PE = 4; SV = 1; A9RPK4 | − | + |
| 83 | A9SIT1_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_165118 PE = 4; SV = 1 | − | + |
| 84 | A9U068_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_227113 PE = 4; SV = 1 | − | + |
| 85 | A9T8V9_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_89614 PE = 4; SV = 1; B7SB99 | − | + |
| 86 | A9TJZ6_PHYPA Predicted protein OS = Physcomitrella patens subsp. patens GN = PHYPADRAFT_146721 PE = 4; SV = 1 | − | + |
Figure 1Scheme of changes in deuterium metabolism depending on chirality according to the “switch on/off” mechanism.
Figure 2Possible kinetic model diagram of the vital activity of high-level biological taxons depending on the D/H ratio in the aquatic environment (1—animal; 2—bacteria; 3—plants).