| Literature DB >> 32731517 |
Abstract
Noble <span class="Gene">gas (or aerogen) bond (<span class="Gene">NgB) can be outlined as the attractive interaction between an electron-rich atom or group of atoms and any element of Group-18 acting as an electron acceptor. The IUPAC already recommended systematic nomenclature for the interactions of groups 17 and 16 (halogen and chalcogen bonds, respectively). Investigations dealing with noncovalent interactions involving main group elements (acting as Lewis acids) have rapidly grown in recent years. They are becoming acting players in essential fields such as crystal engineering, supramolecular chemistry, and catalysis. For obvious reasons, the works devoted to the study of noncovalent Ng-bonding interactions are significantly less abundant than halogen, chalcogen, pnictogen, and tetrel bonding. Nevertheless, in this short review, relevant theoretical and experimental investigations on noncovalent interactions involving Xenon are emphasized. Several theoretical works have described the physical nature of NgB and their interplay with other noncovalent interactions, which are discussed herein. Moreover, exploring the Cambridge Structural Database (CSD) and Inorganic Crystal Structure Database (ICSD), it is demonstrated that NgB interactions are crucial in governing the X-ray packing of xenon derivatives. Concretely, special attention is given to xenon fluorides and xenon oxides, since they exhibit a strong tendency to establish NgBs.Entities:
Keywords: crystal packing; noble gas interactions; noncovalent interactions; xenon
Year: 2020 PMID: 32731517 PMCID: PMC7435756 DOI: 10.3390/molecules25153419
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Groups 11 to 18 and their respective names that are used in the literature.
Figure 2Ball and Stick representation of the X-ray structure (two views) of XeO3, refcode ICSD-26627. Distances in Å.
Figure 3Molecular electrostatic potential (MEP) surfaces of XeO3 using two different scales. Isosurface 0.01 a.u.
Interaction energies and equilibrium distances (ΔE in kcal/mol and d in Å) taken from ref. [81].
| Complex | Δ | d |
|---|---|---|
|
| −9.5 | 3.142 |
|
| −9.0 | 2.779 |
|
| −37.2 | 2.784 |
|
| −32.6 | 2.983 |
Figure 4Distribution of bond critical points (in red) and bond paths in the XeO3⋯NCCH3 (left) and XeO3⋯NH3 (right) complex. The results from the Natural Bond Orbital (NBO) analysis are also indicated close to the complexes. LP stands for lone pair.
Figure 5Ball and Stick representation of the X-ray structure of XeF4, refcode ICSD-27467. Distance in Å.
Figure 6MEP surfaces of XeF4 using two different scales shown below the surfaces. Blue color is used for the maximum and red color for the minimum MEP value. Isosurface 0.01 a.u.
Figure 7Ng⋯π and lone pair⋯π complexes of XeO3 with benzene (a,b) and hexafluorobenzene (c,d) and their interaction energy. Distances in Å.
Figure 8Perspective and on-top views of the complex of XeO3 with 18-crown-6 and its interaction energy. Distances in Å.
Figure 9Ternary systems used by Esrafili et al. [107,108,109] to study the cooperativity effect between noble gas (or aerogen) bond (NgBs) and AkB, HaB, ChB, and PnB interactions using XeO3 as an NgB donor.
Figure 10Four component system used by Esrafili et al. [97] to study the cooperativity effect between NgBs and anion–π interactions using XeO3 as an NgB donor and 1,4-dicyanobenzene.
Figure 11Partial views of the X-ray structures corresponding to Cambride structural database (CSD) reference codes KAZMEG (left) and KAZLUV (right) corresponding to tris(tetraethylammonium), tris(μ-chloro)-(μ-oxo)-octaoxo-tri-xenon, and tris(tetraethylammonium), tris(μ-bromo)-(μ-oxo)-octaoxo-tri-xenon acetonitrile solvate, respectively. Distances in Å. Counter-cations and solvent molecules omitted for clarity.
Figure 12Partial views of the X-ray structures corresponding to CSD reference codes EZAKIB (left), EZAKUN (middle), and EZAKEX (right) corresponding to bis(propionitrile)-trioxo-xenon, trioxo-propanenitrile-xenon, and bis(acetonitrile)-trioxo-xenon, respectively. Distances in Å.
Figure 13Partial views of the X-ray structures corresponding to CSD reference codes VIFKUT (left) and VIFLEE (right). Distances in Å. The H-atoms are omitted for clarity.
Figure 14Partial views of the X-ray structures corresponding to CSD reference codes JORHIK (left), JORFEE (middle), and JORFAA (right) corresponding to bis(acetone)-trioxo-xenon acetone-trioxo-xenon acetone solvate, (μ-dimethyl sulfoxide)-bis(dimethyl sulfoxide)-hexaoxo-di-xenon, and bis((triphenyl)phosphine oxide)-trioxo-xenon, respectively. Distances in Å. The H atoms are omitted for clarity.
Figure 15Left: MEP surface of XeF2 showing the location of the positive belts. Isosurface 0.01 a.u. Right: MEP surfaces of the octahedral and C3v forms of XeF6.
Figure 16Partial views of the X-ray structures corresponding to ICSD and CSD reference codes ICSD-28334 (a), ICSD-26059 (b), ICSD-422962 (c), ICSD-18128 (d), ICSD-71119 (e), ICSD-391093 (f), ROQQET (g), and WADHIS (h), corresponding to xenon difluoride, xenon difluoride-iodine pentafluoride, xenon difluoride-xenon oxytetrafluoride, xenon difluoride-xenon tetrafluoride, Ag(XeF2)2(AsF6), Pb(XeF2)3(AsF6)2, 2,6-difluorophenyl-xenon trifluoromethanesulfonate, and pentafluorobenzoato-pentafluorophenyl-xenon, respectively. Distances in Å.
Figure 17Partial views of the X-ray structures corresponding to ICSD reference codes ICSD-2747 (a), ICSD-18128 (b), ICSD-71592 (c), and ICSD-419632 (d), corresponding to xenon tetrafluoride, xenon difluoride-xenon tetrafluoride, (CrF6)4(XeF4)5 and [Mg(XeF2)(XeF4)](AsF6)2, respectively. Distances in Å.
Figure 18Partial views of the X-ray structures corresponding to XeF6·CH3CN adducts (a) and ICSD reference codes ICSD-416315 (b, mC32 phase) and ICSD-416317 (c, mP32 phase). Distances in Å.