| Literature DB >> 32680829 |
Hannah Harrison1, Rachel E Thompson2, Zhiyuan Lin2, Sabrina H Rossi3, Grant D Stewart3, Simon J Griffin4, Juliet A Usher-Smith4.
Abstract
CONTEXT: Early detection of kidney cancer improves survival; however, low prevalence means that population-wide screening may be inefficient. Stratification of the population into risk categories could allow for the introduction of a screening programme tailored to individuals.Entities:
Keywords: Early detection; Kidney cancer; Screening; Systematic review
Mesh:
Substances:
Year: 2020 PMID: 32680829 PMCID: PMC8642244 DOI: 10.1016/j.euf.2020.06.024
Source DB: PubMed Journal: Eur Urol Focus ISSN: 2405-4569
Fig. 1PRISMA flow diagram. PRISMA = Preferred Reporting Items for Systematic Reviews and Meta-analyses; UTCa = urothelial cancer.
Characteristics of risk prediction models.
| First author (year) | Sex | Genetic factors | Biomarkers | Age | Smoking | Prediction type | Study type | Setting summary | Country(s) | TRIPOD | Reported performance measures |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Frantzi (2014) | Both | Current | CC | Hospital | UK and USA | 1b | AUC, sensitivity, specificity | ||||
| Kim (2013) | Both | × | × | Current | CC | Mixed/unclear | Korea | 2b | AUC, sensitivity, specificity, PPV, NPV | ||
| Kim (2013) | Both | × | Current | CC | Mixed/unclear | Korea | 2b | AUC, sensitivity, specificity, PPV, NPV | |||
| Morrissey (2015) | Both | × | Current | CC | Hospital | USA | 1a | AUC, sensitivity, specificity | |||
| Scelo (2018) | Both | × | × | Current (potential for predicting future) | NCC | General population | Denmark, France, Germany, Greece, Italy, the Netherlands, Norway, UK, and Spain | 1a | AUC, sensitivity, specificity | ||
| Scelo (2018) | Both | × | × | × | Current (potential for predicting future) | NCC | General population | Denmark, France, Germany, Greece, Italy, the Netherlands, Norway, UK, and Spain | 1a | AUC, sensitivity, specificity | |
| Shephard (2013) | Both | × | Current | CC | General population | UK | 1a | PPV | |||
| Usher-Smith (2019) | M | × | × | Future | Ch | General population | UK | 3 | AUC | ||
| Usher-Smith (2019) | F | × | × | Future | Ch | General population | UK | 3 | AUC | ||
| Wu (2016) | Both | × | Current | CC | Hospital | China | 2a | AUC, ACC, sensitivity, specificity | |||
| Wu (2016) | Both | × | Future | CC | Hospital | China | 1a | AUC |
ACC = accuracy; AUC = area under the curve; CC = case-control study; Ch = cohort study; F = female; M = male; NCC = nested case-control study; NPV = negative predictive value; PPV = positive predictive value.
Models applicable to only men (M), only women (F), or both sexes (both).
Classification of models using the TRIPOD guidelines: 1a, 1b, 2a, 2b, 3, and 4 (external validation).
Risk factors considered and included in the models.
| Risk factors | Considered | Included | Comment | |
|---|---|---|---|---|
| Phenotypic (excluding biomarkers) | Age | 5 | 5 | Demographic |
| Smoking status | 5 | 5 | Lifestyle | |
| Weight or BMI | 4 | 4 | Physiological | |
| Haematuria | 2 | 2 | Symptom | |
| Gender | 2 | 2 | Demographic | |
| Country of residence | 2 | 2 | Demographic | |
| Abdominal pain | 1 | 1 | Symptom | |
| Constipation | 1 | 1 | Symptom | |
| Tiredness or fatigue | 1 | 1 | Symptom | |
| Back pain | 1 | 1 | Symptom | |
| Nausea | 1 | 1 | Symptom | |
| Lower urinary tract infection | 1 | 1 | Symptom | |
| Type 2 diabetes | 2 | 0 | Physiological | |
| Hypertension | 2 | 0 | Physiological | |
| Biomarkers | N-methyltransferase (NNMT) | 2 | 2 | Protein, blood |
| L-plastin (LCP1) | 2 | 2 | Protein, blood | |
| Nonmetastatic cells 1 protein | 2 | 2 | Protein, blood | |
| Creatinine | 2 | 1 | Protein, blood | |
| Raised inflammatory markers (unspecified) | 1 | 1 | Protein(s), blood | |
| Kidney Injury Molecule-1 (KIM-1) | 1 | 1 | Protein, blood | |
| Haemoglobin (test for low levels) | 1 | 1 | Protein, blood | |
| Raised liver function test | 1 | 1 | Protein(s), blood | |
| Hyperglycaemia (raised blood sugar) | 1 | 1 | Other, blood | |
| Microcytosis | 1 | 1 | Other, blood | |
| Peptides (not listed) | 1 | 1 | Protein(s), urine | |
| lncRNA-LET | 1 | 1 | lncRNA, blood | |
| Plasmacytoma Variant Translocation 1 (PVT1) | 1 | 1 | lncRNA, blood | |
| lncRNA-PANDAR | 1 | 1 | lncRNA, blood | |
| Phosphatase and tensin homolog pseudogene 1 (PTENP1) | 1 | 1 | lncRNA, blood | |
| Long Intergenic Non-Protein Coding RNA 963 (LINC00963) | 1 | 1 | lncRNA, blood | |
| Thrombocytosis (test for platelet level) | 1 | 1 | Cell count, blood | |
| Leucocytosis (test for white blood cell levels) | 1 | 1 | Cell count, blood | |
| Aquaporin-1 | 1 | 1 | Protein, urine | |
| Perilipin-2 | 1 | 1 | Protein, urine | |
| Tumour Necrosis Factor Receptor-1 (TNFR1) | 1 | 0 | Protein, blood | |
| Tumour Necrosis Factor Receptor-2 (TNFR2) | 1 | 0 | Protein, blood | |
| Genetic | rs1049380 | 1 | 1 | SNP |
| rs7023329 | 1 | 1 | SNP | |
| rs718314 | 1 | 1 | SNP | |
| rs10054504 | 1 | 0 | SNP | |
BMI = body mass index; lncRNA = long noncoding RNA; SNP = single nucleotide polymorphism.
Biomarker tests are widely available in clinical practice.
Fig. 2The PROBAST assessment of the 11 included models with performance measures. (A) Risk of bias and (B) concerns about applicability are assessed over four and three domains, respectively. Domain 1: population; domain 2: risk factors; domain 3: outcomes; and domain 4: analysis. The development (left) and validation (right) are assessed separately for each model. The total score for risk of bias and concerns about applicability is based on the scores across the three (or four) domains. If the model scores high (or unclear) in any one domain, the overall score is high (or unclear); for the model to receive a low overall score it must score low in every domain. D = domain.
Fig. 3The AUROC values reported for 10 of the included models. The models are grouped by the type of risk factor; within each group, the models are ordered by the number of risk factors included in the model (left to right). The groups are labelled as follows: A—genetic risk factors, B—demographic and lifestyle risk factors, C—demographic and lifestyle risk factors combined with biomarkers, and D—only biomarkers. The type of model (development, and internal and external validation), sex of the population used, and inclusion of age as a risk factor are indicated in the figure. AUROC = area under the receiver-operating curve.
Fig. 4The (A) sensitivity and (B) specificity values reported for seven of the included models. The models are grouped by the type of risk factor; within each group, the models are ordered by the number of risk factors included in the model (left to right). The groups are labelled as follows: B—demographic and lifestyle risk factors, C—demographic and lifestyle risk factors combined with biomarkers, and D—only biomarkers. The type of model (development, and internal and external validation), sex of the population used, and inclusion of age as a risk factor are indicated in the figure.