Literature DB >> 32561165

Methods to Study Phase-Separated Condensates and the Underlying Molecular Interactions.

Laura R Ganser1, Sua Myong2.   

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Year:  2020        PMID: 32561165      PMCID: PMC7697221          DOI: 10.1016/j.tibs.2020.05.011

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


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  10 in total

1.  The disordered P granule protein LAF-1 drives phase separation into droplets with tunable viscosity and dynamics.

Authors:  Shana Elbaum-Garfinkle; Younghoon Kim; Krzysztof Szczepaniak; Carlos Chih-Hsiung Chen; Christian R Eckmann; Sua Myong; Clifford P Brangwynne
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-26       Impact factor: 11.205

2.  Valence and patterning of aromatic residues determine the phase behavior of prion-like domains.

Authors:  Erik W Martin; Alex S Holehouse; Ivan Peran; Mina Farag; J Jeremias Incicco; Anne Bremer; Christy R Grace; Andrea Soranno; Rohit V Pappu; Tanja Mittag
Journal:  Science       Date:  2020-02-07       Impact factor: 47.728

Review 3.  The (un)structural biology of biomolecular liquid-liquid phase separation using NMR spectroscopy.

Authors:  Anastasia C Murthy; Nicolas L Fawzi
Journal:  J Biol Chem       Date:  2020-01-07       Impact factor: 5.157

4.  Loss of Dynamic RNA Interaction and Aberrant Phase Separation Induced by Two Distinct Types of ALS/FTD-Linked FUS Mutations.

Authors:  Amirhossein Ghanbari Niaki; Jaya Sarkar; Xinyi Cai; Kevin Rhine; Velinda Vidaurre; Brian Guy; Miranda Hurst; Jong Chan Lee; Hye Ran Koh; Lin Guo; Charlotte M Fare; James Shorter; Sua Myong
Journal:  Mol Cell       Date:  2019-10-17       Impact factor: 17.970

5.  Single-molecule pull-down for studying protein interactions.

Authors:  Ankur Jain; Ruijie Liu; Yang K Xiang; Taekjip Ha
Journal:  Nat Protoc       Date:  2012-02-09       Impact factor: 13.491

6.  Structural and hydrodynamic properties of an intrinsically disordered region of a germ cell-specific protein on phase separation.

Authors:  Jacob P Brady; Patrick J Farber; Ashok Sekhar; Yi-Hsuan Lin; Rui Huang; Alaji Bah; Timothy J Nott; Hue Sun Chan; Andrew J Baldwin; Julie D Forman-Kay; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-11       Impact factor: 11.205

Review 7.  Methods for Physical Characterization of Phase-Separated Bodies and Membrane-less Organelles.

Authors:  Diana M Mitrea; Bappaditya Chandra; Mylene C Ferrolino; Eric B Gibbs; Michele Tolbert; Michael R White; Richard W Kriwacki
Journal:  J Mol Biol       Date:  2018-07-24       Impact factor: 5.469

8.  Coexisting Liquid Phases Underlie Nucleolar Subcompartments.

Authors:  Marina Feric; Nilesh Vaidya; Tyler S Harmon; Diana M Mitrea; Lian Zhu; Tiffany M Richardson; Richard W Kriwacki; Rohit V Pappu; Clifford P Brangwynne
Journal:  Cell       Date:  2016-05-19       Impact factor: 41.582

9.  A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins.

Authors:  Jie Wang; Jeong-Mo Choi; Alex S Holehouse; Hyun O Lee; Xiaojie Zhang; Marcus Jahnel; Shovamayee Maharana; Régis Lemaitre; Andrei Pozniakovsky; David Drechsel; Ina Poser; Rohit V Pappu; Simon Alberti; Anthony A Hyman
Journal:  Cell       Date:  2018-06-28       Impact factor: 41.582

10.  Compositional Control of Phase-Separated Cellular Bodies.

Authors:  Salman F Banani; Allyson M Rice; William B Peeples; Yuan Lin; Saumya Jain; Roy Parker; Michael K Rosen
Journal:  Cell       Date:  2016-06-30       Impact factor: 41.582

  10 in total
  6 in total

Review 1.  Nuclear compartmentalization as a mechanism of quantitative control of gene expression.

Authors:  Prashant Bhat; Drew Honson; Mitchell Guttman
Journal:  Nat Rev Mol Cell Biol       Date:  2021-08-02       Impact factor: 94.444

Review 2.  It's Just a Phase: Exploring the Relationship Between mRNA, Biomolecular Condensates, and Translational Control.

Authors:  Dylan M Parker; Lindsay P Winkenbach; Erin Osborne Nishimura
Journal:  Front Genet       Date:  2022-06-27       Impact factor: 4.772

3.  Single-droplet surface-enhanced Raman scattering decodes the molecular determinants of liquid-liquid phase separation.

Authors:  Anamika Avni; Ashish Joshi; Anuja Walimbe; Swastik G Pattanashetty; Samrat Mukhopadhyay
Journal:  Nat Commun       Date:  2022-07-28       Impact factor: 17.694

Review 4.  Aging RNA granule dynamics in neurodegeneration.

Authors:  Kevin Rhine; Norah Al-Azzam; Tao Yu; Gene W Yeo
Journal:  Front Mol Biosci       Date:  2022-09-16

5.  The Role of Non-Specific Interactions in Canonical and ALT-Associated PML-Bodies Formation and Dynamics.

Authors:  Alexander V Fonin; Sergey A Silonov; Olesya G Shpironok; Iuliia A Antifeeva; Alexey V Petukhov; Anna E Romanovich; Irina M Kuznetsova; Vladimir N Uversky; Konstantin K Turoverov
Journal:  Int J Mol Sci       Date:  2021-05-29       Impact factor: 5.923

Review 6.  An Expanding Toolkit for Heterochromatin Repair Studies.

Authors:  Chetan C Rawal; Nadejda L Butova; Anik Mitra; Irene Chiolo
Journal:  Genes (Basel)       Date:  2022-03-17       Impact factor: 4.141

  6 in total

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