Literature DB >> 30017918

Methods for Physical Characterization of Phase-Separated Bodies and Membrane-less Organelles.

Diana M Mitrea1, Bappaditya Chandra2, Mylene C Ferrolino2, Eric B Gibbs2, Michele Tolbert2, Michael R White2, Richard W Kriwacki3.   

Abstract

Membrane-less organelles are cellular structures which arise through the phenomenon of phase separation. This process enables compartmentalization of specific sets of macromolecules (e.g., proteins, nucleic acids), thereby regulating cellular processes by increasing local concentration, and modulating the structure and dynamics of their constituents. Understanding the connection between structure, material properties and function of membrane-less organelles requires inter-disciplinary approaches, which address length and timescales that span several orders of magnitude (e.g., Ångstroms to micrometer, picoseconds to hours). In this review, we discuss the wide variety of methods that have been applied to characterize the morphology, rheology, structure and dynamics of membrane-less organelles and their components, in vitro and in live cells.
Copyright © 2018. Published by Elsevier Ltd.

Entities:  

Keywords:  membrane-less; methods; organelles; phase; separation

Mesh:

Substances:

Year:  2018        PMID: 30017918      PMCID: PMC6503534          DOI: 10.1016/j.jmb.2018.07.006

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  199 in total

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Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

2.  Dynamics of component exchange at PML nuclear bodies.

Authors:  Stefanie Weidtkamp-Peters; Thorsten Lenser; Dmitri Negorev; Norman Gerstner; Thomas G Hofmann; Georg Schwanitz; Christian Hoischen; Gerd Maul; Peter Dittrich; Peter Hemmerich
Journal:  J Cell Sci       Date:  2008-07-29       Impact factor: 5.285

Review 3.  Emerging applications of small angle solution scattering in structural biology.

Authors:  Barnali N Chaudhuri
Journal:  Protein Sci       Date:  2015-02-12       Impact factor: 6.725

Review 4.  Nucleocytoplasmic shuttling: The ins and outs of quantitative imaging.

Authors:  Chris Molenaar; Kate L Weeks
Journal:  Clin Exp Pharmacol Physiol       Date:  2018-10       Impact factor: 2.557

5.  Weak and Transient Protein Interactions Determined by Solid-State NMR.

Authors:  Hugh R W Dannatt; Michele Felletti; Stefan Jehle; Yao Wang; Lyndon Emsley; Nicholas E Dixon; Anne Lesage; Guido Pintacuda
Journal:  Angew Chem Int Ed Engl       Date:  2016-04-21       Impact factor: 15.336

6.  Phase Separation Behavior of Supercharged Proteins and Polyelectrolytes.

Authors:  Chad S Cummings; Allie C Obermeyer
Journal:  Biochemistry       Date:  2017-12-28       Impact factor: 3.162

7.  ALS Mutations Disrupt Phase Separation Mediated by α-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain.

Authors:  Alexander E Conicella; Gül H Zerze; Jeetain Mittal; Nicolas L Fawzi
Journal:  Structure       Date:  2016-08-18       Impact factor: 5.006

8.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

9.  Measuring the Viscosity of the Escherichia coli Plasma Membrane Using Molecular Rotors.

Authors:  Jacek T Mika; Alexander J Thompson; Michael R Dent; Nicholas J Brooks; Jan Michiels; Johan Hofkens; Marina K Kuimova
Journal:  Biophys J       Date:  2016-10-04       Impact factor: 4.033

10.  Sequence determinants of protein phase behavior from a coarse-grained model.

Authors:  Gregory L Dignon; Wenwei Zheng; Young C Kim; Robert B Best; Jeetain Mittal
Journal:  PLoS Comput Biol       Date:  2018-01-24       Impact factor: 4.475

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  41 in total

1.  Phase Separation in Biology and Disease.

Authors:  Julie D Forman-Kay; Richard W Kriwacki; Geraldine Seydoux
Journal:  J Mol Biol       Date:  2018-09-11       Impact factor: 5.469

Review 2.  RNA contributions to the form and function of biomolecular condensates.

Authors:  Christine Roden; Amy S Gladfelter
Journal:  Nat Rev Mol Cell Biol       Date:  2020-07-06       Impact factor: 94.444

3.  Phase separation of ligand-activated enhancers licenses cooperative chromosomal enhancer assembly.

Authors:  Sreejith J Nair; Lu Yang; Dario Meluzzi; Soohwan Oh; Feng Yang; Meyer J Friedman; Susan Wang; Tom Suter; Ibraheem Alshareedah; Amir Gamliel; Qi Ma; Jie Zhang; Yiren Hu; Yuliang Tan; Kenneth A Ohgi; Ranveer Singh Jayani; Priya R Banerjee; Aneel K Aggarwal; Michael G Rosenfeld
Journal:  Nat Struct Mol Biol       Date:  2019-03-04       Impact factor: 15.369

Review 4.  Physical Chemistry of Cellular Liquid-Phase Separation.

Authors:  Emily P Bentley; Benjamin B Frey; Ashok A Deniz
Journal:  Chemistry       Date:  2019-02-07       Impact factor: 5.236

5.  Heterochromatin Protein HP1α Gelation Dynamics Revealed by Solid-State NMR Spectroscopy.

Authors:  Bryce E Ackermann; Galia T Debelouchina
Journal:  Angew Chem Int Ed Engl       Date:  2019-04-03       Impact factor: 15.336

Review 6.  Methods to Study Phase-Separated Condensates and the Underlying Molecular Interactions.

Authors:  Laura R Ganser; Sua Myong
Journal:  Trends Biochem Sci       Date:  2020-06-16       Impact factor: 13.807

Review 7.  Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates.

Authors:  Simon Alberti; Amy Gladfelter; Tanja Mittag
Journal:  Cell       Date:  2019-01-24       Impact factor: 41.582

Review 8.  Nonspecific characteristics of macromolecules create specific effects in living cells.

Authors:  Kanta Tsumoto; Hiroki Sakuta; Kingo Takiguchi; Kenichi Yoshikawa
Journal:  Biophys Rev       Date:  2020-03-06

Review 9.  Liquid-liquid phase separation: a principal organizer of the cell's biochemical activity architecture.

Authors:  Jason Z Zhang; Sohum Mehta; Jin Zhang
Journal:  Trends Pharmacol Sci       Date:  2021-08-06       Impact factor: 14.819

10.  Determination of Protein Phase Diagrams by Centrifugation.

Authors:  Nicole M Milkovic; Tanja Mittag
Journal:  Methods Mol Biol       Date:  2020
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