Literature DB >> 32485105

Targeted Diversification in the S. cerevisiae Genome with CRISPR-Guided DNA Polymerase I.

Connor J Tou1,2, David V Schaffer1,3,4,5,2, John E Dueber1,6,2.   

Abstract

New technologies to target nucleotide diversification in vivo are promising enabling strategies to perform directed evolution for engineering applications and forward genetics for addressing biological questions. Recently, we reported EvolvR-a system that employs CRISPR-guided Cas9 nickases fused to nick-translating, error-prone DNA polymerases to diversify targeted genomic loci-in E. coli. As CRISPR-Cas9 has shown activity across diverse cell types, EvolvR has the potential to be ported into other organisms, including eukaryotes, if nick-translating polymerases can be active across species. Here, we implement and characterize EvolvR's function in Saccharomyces cerevisiae, representing a key first step to enable EvolvR-mediated mutagenesis in eukaryotes. This advance will be useful for mutagenesis of user-defined loci in the yeast chromosomes for both engineering and basic research applications, and it furthermore provides a platform to develop the EvolvR technology for performance in higher eukaryotes.

Entities:  

Keywords:  CRISPR; EvolvR; directed evolution; forward genetics; mutagenesis; yeast

Mesh:

Substances:

Year:  2020        PMID: 32485105     DOI: 10.1021/acssynbio.0c00149

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  12 in total

Review 1.  Methods for the directed evolution of biomolecular interactions.

Authors:  Victoria Cochran Xie; Matthew J Styles; Bryan C Dickinson
Journal:  Trends Biochem Sci       Date:  2022-05       Impact factor: 14.264

2.  Saccharomyces cerevisiae as a Heterologous Host for Natural Products.

Authors:  Maximilian Otto; Dany Liu; Verena Siewers
Journal:  Methods Mol Biol       Date:  2022

Review 3.  CRISPR-based genome editing through the lens of DNA repair.

Authors:  Tarun S Nambiar; Lou Baudrier; Pierre Billon; Alberto Ciccia
Journal:  Mol Cell       Date:  2022-01-20       Impact factor: 17.970

Review 4.  Systems for in vivo hypermutation: a quest for scale and depth in directed evolution.

Authors:  Gordon Rix; Chang C Liu
Journal:  Curr Opin Chem Biol       Date:  2021-03-27       Impact factor: 8.972

Review 5.  CRISPR-Cas9: A Powerful Tool to Efficiently Engineer Saccharomyces cerevisiae.

Authors:  João Rainha; Joana L Rodrigues; Lígia R Rodrigues
Journal:  Life (Basel)       Date:  2020-12-26

6.  enAsCas12a Enables CRISPR-Directed Evolution to Screen for Functional Drug Resistance Mutations in Sequences Inaccessible to SpCas9.

Authors:  Jasper Edgar Neggers; Maarten Jacquemyn; Tim Dierckx; Benjamin Peter Kleinstiver; Hendrik Jan Thibaut; Dirk Daelemans
Journal:  Mol Ther       Date:  2020-09-20       Impact factor: 11.454

7.  Using continuous directed evolution to improve enzymes for plant applications.

Authors:  Jorge D García-García; Kristen Van Gelder; Jaya Joshi; Ulschan Bathe; Bryan J Leong; Steven D Bruner; Chang C Liu; Andrew D Hanson
Journal:  Plant Physiol       Date:  2022-02-04       Impact factor: 8.340

8.  Research progress of pathway and genome evolution in microbes.

Authors:  Chaoqun Huang; Chang Wang; Yunzi Luo
Journal:  Synth Syst Biotechnol       Date:  2022-02-14

Review 9.  Engineering of Synthetic Transcriptional Switches in Yeast.

Authors:  Masahiro Tominaga; Akihiko Kondo; Jun Ishii
Journal:  Life (Basel)       Date:  2022-04-08

Review 10.  Genome editor-directed in vivo library diversification.

Authors:  Cristina Cheng; Mi Zhou; Qiwen Su; Alexandra Steigmeyer; Jia Niu
Journal:  Cell Chem Biol       Date:  2021-06-08       Impact factor: 9.039

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