Literature DB >> 34107297

Genome editor-directed in vivo library diversification.

Cristina Cheng1, Mi Zhou1, Qiwen Su1, Alexandra Steigmeyer1, Jia Niu2.   

Abstract

The generation of a library of variant genes is a prerequisite of directed evolution, a powerful tool for biomolecular engineering. As the number of all possible sequences often far exceeds the diversity of a practical library, methods that allow efficient library diversification in living cells are essential for in vivo directed evolution technologies to effectively sample the sequence space and allow hits to emerge. While traditional whole-genome mutagenesis often results in toxicity and the emergence of "cheater" mutations, recent developments that exploit the targeting and editing abilities of genome editors to facilitate in vivo library diversification have allowed for precise mutagenesis focused on specific genes of interest, higher mutational density, and reduced the occurrence of cheater mutations. This minireview summarizes recent advances in genome editor-directed in vivo library diversification and provides an outlook on their future applications in chemical biology.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  CRISPR; base editing; directed evolution; error-prone polymerase; genome editing; in vivo library diversification; recombinase; targeted mutagenesis; transposase

Mesh:

Year:  2021        PMID: 34107297      PMCID: PMC8380701          DOI: 10.1016/j.chembiol.2021.05.008

Source DB:  PubMed          Journal:  Cell Chem Biol        ISSN: 2451-9448            Impact factor:   9.039


  55 in total

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Journal:  Nature       Date:  2011-04-10       Impact factor: 49.962

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Authors:  Nathan Crook; Joseph Abatemarco; Jie Sun; James M Wagner; Alexander Schmitz; Hal S Alper
Journal:  Nat Commun       Date:  2016-10-17       Impact factor: 14.919

7.  Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage.

Authors:  Nicole M Gaudelli; Alexis C Komor; Holly A Rees; Michael S Packer; Ahmed H Badran; David I Bryson; David R Liu
Journal:  Nature       Date:  2017-10-25       Impact factor: 49.962

8.  Rapid generation of drug-resistance alleles at endogenous loci using CRISPR-Cas9 indel mutagenesis.

Authors:  Jonathan J Ipsaro; Chen Shen; Eri Arai; Yali Xu; Justin B Kinney; Leemor Joshua-Tor; Christopher R Vakoc; Junwei Shi
Journal:  PLoS One       Date:  2017-02-23       Impact factor: 3.240

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Authors:  Haroon Butt; Ayman Eid; Afaque A Momin; Jeremie Bazin; Martin Crespi; Stefan T Arold; Magdy M Mahfouz
Journal:  Genome Biol       Date:  2019-04-30       Impact factor: 13.583

10.  Development of potent in vivo mutagenesis plasmids with broad mutational spectra.

Authors:  Ahmed H Badran; David R Liu
Journal:  Nat Commun       Date:  2015-10-07       Impact factor: 14.919

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