Literature DB >> 35427479

Methods for the directed evolution of biomolecular interactions.

Victoria Cochran Xie1, Matthew J Styles1, Bryan C Dickinson2.   

Abstract

Noncovalent interactions between biomolecules such as proteins and nucleic acids coordinate all cellular processes through changes in proximity. Tools that perturb these interactions are and will continue to be highly valuable for basic and translational scientific endeavors. By taking cues from natural systems, such as the adaptive immune system, we can design directed evolution platforms that can generate proteins that bind to biomolecules of interest. In recent years, the platforms used to direct the evolution of biomolecular binders have greatly expanded the range of types of interactions one can evolve. Herein, we review recent advances in methods to evolve protein-protein, protein-RNA, and protein-DNA interactions.
Copyright © 2022 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  biomolecular interactions; continuous evolution; directed evolution; phage-assisted continuous evolution (PACE); protein–protein interactions (PPIs)

Mesh:

Substances:

Year:  2022        PMID: 35427479      PMCID: PMC9022280          DOI: 10.1016/j.tibs.2022.01.001

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   14.264


  119 in total

1.  Directed evolution of a protein container.

Authors:  Bigna Wörsdörfer; Kenneth J Woycechowsky; Donald Hilvert
Journal:  Science       Date:  2011-02-04       Impact factor: 47.728

2.  RNA-peptide fusions for the in vitro selection of peptides and proteins.

Authors:  R W Roberts; J W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

Review 3.  The developing toolkit of continuous directed evolution.

Authors:  Mary S Morrison; Christopher J Podracky; David R Liu
Journal:  Nat Chem Biol       Date:  2020-05-22       Impact factor: 15.040

Review 4.  The next generation of CRISPR-Cas technologies and applications.

Authors:  Adrian Pickar-Oliver; Charles A Gersbach
Journal:  Nat Rev Mol Cell Biol       Date:  2019-08       Impact factor: 94.444

5.  Bacterial charity work leads to population-wide resistance.

Authors:  Henry H Lee; Michael N Molla; Charles R Cantor; James J Collins
Journal:  Nature       Date:  2010-09-02       Impact factor: 49.962

6.  Targeted Diversification in the S. cerevisiae Genome with CRISPR-Guided DNA Polymerase I.

Authors:  Connor J Tou; David V Schaffer; John E Dueber
Journal:  ACS Synth Biol       Date:  2020-06-16       Impact factor: 5.110

7.  A system for the continuous directed evolution of biomolecules.

Authors:  Kevin M Esvelt; Jacob C Carlson; David R Liu
Journal:  Nature       Date:  2011-04-10       Impact factor: 49.962

8.  In vivo continuous evolution of genes and pathways in yeast.

Authors:  Nathan Crook; Joseph Abatemarco; Jie Sun; James M Wagner; Alexander Schmitz; Hal S Alper
Journal:  Nat Commun       Date:  2016-10-17       Impact factor: 14.919

9.  High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects.

Authors:  Benjamin P Kleinstiver; Vikram Pattanayak; Michelle S Prew; Shengdar Q Tsai; Nhu T Nguyen; Zongli Zheng; J Keith Joung
Journal:  Nature       Date:  2016-01-06       Impact factor: 49.962

10.  Evolution of a reverse transcriptase to map N1-methyladenosine in human messenger RNA.

Authors:  Huiqing Zhou; Simone Rauch; Qing Dai; Xiaolong Cui; Zijie Zhang; Sigrid Nachtergaele; Caraline Sepich; Chuan He; Bryan C Dickinson
Journal:  Nat Methods       Date:  2019-09-23       Impact factor: 28.547

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