Literature DB >> 33375364

CRISPR-Cas9: A Powerful Tool to Efficiently Engineer Saccharomyces cerevisiae.

João Rainha1, Joana L Rodrigues1, Lígia R Rodrigues1.   

Abstract

Saccharomyces cerevisiae has been for a long time a common model for fundamental biological studies and a popular biotechnological engineering platform to produce chemicals, fuels, and pharmaceuticals due to its peculiar characteristics. Both lines of research require an effective editing of the native genetic elements or the inclusion of heterologous pathways into the yeast genome. Although S. cerevisiae is a well-known host with several molecular biology tools available, a more precise tool is still needed. The clustered, regularly interspaced, short palindromic repeats-associated Cas9 (CRISPR-Cas9) system is a current, widespread genome editing tool. The implementation of a reprogrammable, precise, and specific method, such as CRISPR-Cas9, to edit the S. cerevisiae genome has revolutionized laboratory practices. Herein, we describe and discuss some applications of the CRISPR-Cas9 system in S. cerevisiae from simple gene knockouts to more complex processes such as artificial heterologous pathway integration, transcriptional regulation, or tolerance engineering.

Entities:  

Keywords:  CRISPR-Cas9; CRISPR-Cas9 applications; Saccharomyces cerevisiae; genome editing

Year:  2020        PMID: 33375364      PMCID: PMC7823794          DOI: 10.3390/life11010013

Source DB:  PubMed          Journal:  Life (Basel)        ISSN: 2075-1729


  68 in total

1.  CRISPR provides acquired resistance against viruses in prokaryotes.

Authors:  Rodolphe Barrangou; Christophe Fremaux; Hélène Deveau; Melissa Richards; Patrick Boyaval; Sylvain Moineau; Dennis A Romero; Philippe Horvath
Journal:  Science       Date:  2007-03-23       Impact factor: 47.728

2.  E-CRISP: fast CRISPR target site identification.

Authors:  Florian Heigwer; Grainne Kerr; Michael Boutros
Journal:  Nat Methods       Date:  2014-02       Impact factor: 28.547

Review 3.  Introduction and expression of genes for metabolic engineering applications in Saccharomyces cerevisiae.

Authors:  Nancy A Da Silva; Sneha Srikrishnan
Journal:  FEMS Yeast Res       Date:  2012-01-12       Impact factor: 2.796

Review 4.  Metabolic engineering of yeast for production of fuels and chemicals.

Authors:  Jens Nielsen; Christer Larsson; Antonius van Maris; Jack Pronk
Journal:  Curr Opin Biotechnol       Date:  2013-04-20       Impact factor: 9.740

5.  Targeted Diversification in the S. cerevisiae Genome with CRISPR-Guided DNA Polymerase I.

Authors:  Connor J Tou; David V Schaffer; John E Dueber
Journal:  ACS Synth Biol       Date:  2020-06-16       Impact factor: 5.110

6.  Homology-integrated CRISPR-Cas (HI-CRISPR) system for one-step multigene disruption in Saccharomyces cerevisiae.

Authors:  Zehua Bao; Han Xiao; Jing Liang; Lu Zhang; Xiong Xiong; Ning Sun; Tong Si; Huimin Zhao
Journal:  ACS Synth Biol       Date:  2014-09-19       Impact factor: 5.110

7.  Minimization of the Escherichia coli genome using the Tn5-targeted Cre/loxP excision system.

Authors:  Byung Jo Yu; Chang Kim
Journal:  Methods Mol Biol       Date:  2008

8.  One-step assembly and targeted integration of multigene constructs assisted by the I-SceI meganuclease in Saccharomyces cerevisiae.

Authors:  Niels G A Kuijpers; Soultana Chroumpi; Tim Vos; Daniel Solis-Escalante; Lizanne Bosman; Jack T Pronk; Jean-Marc Daran; Pascale Daran-Lapujade
Journal:  FEMS Yeast Res       Date:  2013-10-07       Impact factor: 2.796

9.  CRISPR/Cas9: a molecular Swiss army knife for simultaneous introduction of multiple genetic modifications in Saccharomyces cerevisiae.

Authors:  Robert Mans; Harmen M van Rossum; Melanie Wijsman; Antoon Backx; Niels G A Kuijpers; Marcel van den Broek; Pascale Daran-Lapujade; Jack T Pronk; Antonius J A van Maris; Jean-Marc G Daran
Journal:  FEMS Yeast Res       Date:  2015-03-04       Impact factor: 2.796

10.  A new laboratory evolution approach to select for constitutive acetic acid tolerance in Saccharomyces cerevisiae and identification of causal mutations.

Authors:  Daniel González-Ramos; Arthur R Gorter de Vries; Sietske S Grijseels; Margo C van Berkum; Steve Swinnen; Marcel van den Broek; Elke Nevoigt; Jean-Marc G Daran; Jack T Pronk; Antonius J A van Maris
Journal:  Biotechnol Biofuels       Date:  2016-08-12       Impact factor: 6.040

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  4 in total

Review 1.  Tips, Tricks, and Potential Pitfalls of CRISPR Genome Editing in Saccharomyces cerevisiae.

Authors:  Jacob S Antony; John M Hinz; John J Wyrick
Journal:  Front Bioeng Biotechnol       Date:  2022-05-30

Review 2.  Heterologous production of chondroitin.

Authors:  Márcia R Couto; Joana L Rodrigues; Lígia R Rodrigues
Journal:  Biotechnol Rep (Amst)       Date:  2022-02-10

3.  A Saccharomyces eubayanus haploid resource for research studies.

Authors:  Jennifer Molinet; Kamila Urbina; Claudia Villegas; Valentina Abarca; Christian I Oporto; Pablo Villarreal; Carlos A Villarroel; Francisco Salinas; Roberto F Nespolo; Francisco A Cubillos
Journal:  Sci Rep       Date:  2022-04-08       Impact factor: 4.379

4.  Phosphorylation of mRNA-Binding Proteins Puf1 and Puf2 by TORC2-Activated Protein Kinase Ypk1 Alleviates Their Repressive Effects.

Authors:  Henri A Galez; Françoise M Roelants; Sarah M Palm; Kendra K Reynaud; Nicholas T Ingolia; Jeremy Thorner
Journal:  Membranes (Basel)       Date:  2021-06-30
  4 in total

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