Literature DB >> 32483365

Base editors for simultaneous introduction of C-to-T and A-to-G mutations.

Rina C Sakata1,2, Soh Ishiguro1,3,4, Hideto Mori1,3,4, Mamoru Tanaka1, Kenji Tatsuno5, Hiroki Ueda6, Shogo Yamamoto5, Motoaki Seki1, Nanami Masuyama1,3,4, Keiji Nishida7,8, Hiroshi Nishimasu9, Kazuharu Arakawa3,4,10, Akihiko Kondo7,8,11, Osamu Nureki9, Masaru Tomita1,3,4,10, Hiroyuki Aburatani5, Nozomu Yachie12,13,14,15,16,17.   

Abstract

We describe base editors that combine both cytosine and adenine base-editing functions. A codon-optimized fusion of the cytosine deaminase PmCDA1, the adenosine deaminase TadA and a Cas9 nickase (Target-ACEmax) showed a high median simultaneous C-to-T and A-to-G editing activity at 47 genomic targets. On-target as well as DNA and RNA off-target activities of Target-ACEmax were similar to those of existing single-function base editors.

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Year:  2020        PMID: 32483365     DOI: 10.1038/s41587-020-0509-0

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  45 in total

Review 1.  State-of-the-art CRISPR for in vivo and cell-based studies in Drosophila.

Authors:  Jonathan Zirin; Justin Bosch; Raghuvir Viswanatha; Stephanie E Mohr; Norbert Perrimon
Journal:  Trends Genet       Date:  2021-12-18       Impact factor: 11.639

Review 2.  Improvement of base editors and prime editors advances precision genome engineering in plants.

Authors:  Kai Hua; Peijin Han; Jian-Kang Zhu
Journal:  Plant Physiol       Date:  2022-03-28       Impact factor: 8.340

Review 3.  Tools for Efficient Genome Editing; ZFN, TALEN, and CRISPR.

Authors:  Yasaman Shamshirgaran; Jun Liu; Huseyin Sumer; Paul J Verma; Amir Taheri-Ghahfarokhi
Journal:  Methods Mol Biol       Date:  2022

4.  Detect-seq reveals out-of-protospacer editing and target-strand editing by cytosine base editors.

Authors:  Zhixin Lei; Haowei Meng; Zhicong Lv; Menghao Liu; Huanan Zhao; Hao Wu; Xiaoxue Zhang; Lulu Liu; Yuan Zhuang; Kailin Yin; Yongchang Yan; Chengqi Yi
Journal:  Nat Methods       Date:  2021-06-07       Impact factor: 28.547

5.  Single-nucleotide-level mapping of DNA regulatory elements that control fetal hemoglobin expression.

Authors:  Li Cheng; Yichao Li; Qian Qi; Peng Xu; Ruopeng Feng; Lance Palmer; Jingjing Chen; Ruiqiong Wu; Tiffany Yee; Jingjing Zhang; Yu Yao; Akshay Sharma; Ross C Hardison; Mitchell J Weiss; Yong Cheng
Journal:  Nat Genet       Date:  2021-05-06       Impact factor: 38.330

6.  Precision genome editing using cytosine and adenine base editors in mammalian cells.

Authors:  Tony P Huang; Gregory A Newby; David R Liu
Journal:  Nat Protoc       Date:  2021-01-18       Impact factor: 13.491

Review 7.  CRISPR-based genome editing through the lens of DNA repair.

Authors:  Tarun S Nambiar; Lou Baudrier; Pierre Billon; Alberto Ciccia
Journal:  Mol Cell       Date:  2022-01-20       Impact factor: 17.970

8.  Highly Efficient CRISPR-Mediated Base Editing in Sinorhizobium meliloti.

Authors:  Longxiang Wang; Yuan Xiao; Xiaowei Wei; Jimin Pan; Deqiang Duanmu
Journal:  Front Microbiol       Date:  2021-06-18       Impact factor: 5.640

9.  Versatile and efficient in vivo genome editing with compact Streptococcus pasteurianus Cas9.

Authors:  Zhiquan Liu; Siyu Chen; Wanhua Xie; Yuning Song; Jinze Li; Liangxue Lai; Zhanjun Li
Journal:  Mol Ther       Date:  2021-06-24       Impact factor: 11.454

Review 10.  CRISPR/Cas based gene editing: marking a new era in medical science.

Authors:  Kirti Prasad; Anila George; Nithin Sam Ravi; Kumarasamypet M Mohankumar
Journal:  Mol Biol Rep       Date:  2021-06-18       Impact factor: 2.316

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