Literature DB >> 34962995

Improvement of base editors and prime editors advances precision genome engineering in plants.

Kai Hua1, Peijin Han1,2, Jian-Kang Zhu1.   

Abstract

Clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR associated protein (Cas)-mediated gene disruption has revolutionized biomedical research as well as plant and animal breeding. However, most disease-causing mutations and agronomically important genetic variations are single base polymorphisms (single-nucleotide polymorphisms) that require precision genome editing tools for correction of the sequences. Although homology-directed repair of double-stranded breaks (DSBs) can introduce precise changes, such repairs are inefficient in differentiated animal and plant cells. Base editing and prime editing are two recently developed genome engineering approaches that can efficiently introduce precise edits into target sites without requirement of DSB formation or donor DNA templates. They have been applied in several plant species with promising results. Here, we review the extensive literature on improving the efficiency, target scope, and specificity of base editors and prime editors in plants. We also highlight recent progress on base editing in plant organellar genomes and discuss how these precision genome editing tools are advancing basic plant research and crop breeding. © American Society of Plant Biologists 2021. All rights reserved. For permissions, please email: journals.permissions@oup.com.

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Year:  2022        PMID: 34962995      PMCID: PMC8968349          DOI: 10.1093/plphys/kiab591

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  163 in total

1.  Precision genome engineering through adenine base editing in plants.

Authors:  Beum-Chang Kang; Jae-Young Yun; Sang-Tae Kim; YouJin Shin; Jahee Ryu; Minkyung Choi; Je Wook Woo; Jin-Soo Kim
Journal:  Nat Plants       Date:  2018-06-04       Impact factor: 15.793

2.  Discriminated sgRNAs-Based SurroGate System Greatly Enhances the Screening Efficiency of Plant Base-Edited Cells.

Authors:  Wen Xu; Yongxing Yang; Ya Liu; Guiting Kang; Feipeng Wang; Lu Li; Xinxin Lv; Si Zhao; Shuang Yuan; Jinling Song; Ying Wu; Feng Feng; Xiaoqing He; Chengwei Zhang; Wei Song; Jiuran Zhao; Jinxiao Yang
Journal:  Mol Plant       Date:  2019-10-18       Impact factor: 13.164

3.  Efficient C•G-to-G•C base editors developed using CRISPRi screens, target-library analysis, and machine learning.

Authors:  Luke W Koblan; Mandana Arbab; Max W Shen; Jeffrey A Hussmann; Andrew V Anzalone; Jordan L Doman; Gregory A Newby; Dian Yang; Beverly Mok; Joseph M Replogle; Albert Xu; Tyler A Sisley; Jonathan S Weissman; Britt Adamson; David R Liu
Journal:  Nat Biotechnol       Date:  2021-06-28       Impact factor: 54.908

4.  In vivo base editing of post-mitotic sensory cells.

Authors:  Wei-Hsi Yeh; Hao Chiang; Holly A Rees; Albert S B Edge; David R Liu
Journal:  Nat Commun       Date:  2018-06-05       Impact factor: 14.919

5.  A bacterial cytidine deaminase toxin enables CRISPR-free mitochondrial base editing.

Authors:  Beverly Y Mok; Marcos H de Moraes; Jun Zeng; Dustin E Bosch; Anna V Kotrys; Aditya Raguram; FoSheng Hsu; Matthew C Radey; S Brook Peterson; Vamsi K Mootha; Joseph D Mougous; David R Liu
Journal:  Nature       Date:  2020-07-08       Impact factor: 49.962

6.  Expanding the genome-targeting scope and the site selectivity of high-precision base editors.

Authors:  Junjie Tan; Fei Zhang; Daniel Karcher; Ralph Bock
Journal:  Nat Commun       Date:  2020-01-31       Impact factor: 14.919

Review 7.  Base editing in crops: current advances, limitations and future implications.

Authors:  Rukmini Mishra; Raj Kumar Joshi; Kaijun Zhao
Journal:  Plant Biotechnol J       Date:  2019-08-15       Impact factor: 9.803

8.  Prime Editing Guide RNA Design Automation Using PINE-CONE.

Authors:  Kylie Standage-Beier; Stefan J Tekel; David A Brafman; Xiao Wang
Journal:  ACS Synth Biol       Date:  2021-01-19       Impact factor: 5.110

Review 9.  Advancing organelle genome transformation and editing for crop improvement.

Authors:  Shengchun Li; Ling Chang; Jiang Zhang
Journal:  Plant Commun       Date:  2021-01-04
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  1 in total

1.  Updates on gene editing and its applications.

Authors:  Holger Puchta; Jiming Jiang; Kan Wang; Yunde Zhao
Journal:  Plant Physiol       Date:  2022-03-28       Impact factor: 8.340

  1 in total

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