Literature DB >> 35696026

Tools for Efficient Genome Editing; ZFN, TALEN, and CRISPR.

Yasaman Shamshirgaran1, Jun Liu2, Huseyin Sumer3, Paul J Verma4, Amir Taheri-Ghahfarokhi5.   

Abstract

The last two decades have marked significant advancement in the genome editing field. Three generations of programmable nucleases (ZFNs, TALENs, and CRISPR-Cas system) have been adopted to introduce targeted DNA double-strand breaks (DSBs) in eukaryotic cells. DNA repair machinery of the cells has been exploited to introduce insertion and deletions (indels) at the targeted DSBs to study function of any gene-of-interest. The resulting indels were generally assumed to be "random" events produced by "error-prone" DNA repair pathways. However, recent advances in computational tools developed to study the Cas9-induced mutations have changed the consensus and implied the "non-randomness" nature of these mutations. Furthermore, CRISPR-centric tools are evolving at an unprecedented pace, for example, base- and prime-editors are the newest developments that have been added to the genome editing toolbox. Altogether, genome editing tools have revolutionized our way of conducting research in life sciences. Here, we present a concise overview of genome editing tools and describe the DNA repair pathways underlying the generation of genome editing outcome.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Cas9; DNA repair; Genome editing; TALEN; ZFN

Mesh:

Substances:

Year:  2022        PMID: 35696026     DOI: 10.1007/978-1-0716-2301-5_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  59 in total

1.  Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures.

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Journal:  Nat Methods       Date:  2010-12-05       Impact factor: 28.547

2.  Quantitative analysis of the packaging capacity of recombinant adeno-associated virus.

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Journal:  Hum Gene Ther       Date:  1996-11-10       Impact factor: 5.695

3.  An improved zinc-finger nuclease architecture for highly specific genome editing.

Authors:  Jeffrey C Miller; Michael C Holmes; Jianbin Wang; Dmitry Y Guschin; Ya-Li Lee; Igor Rupniewski; Christian M Beausejour; Adam J Waite; Nathaniel S Wang; Kenneth A Kim; Philip D Gregory; Carl O Pabo; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2007-07-01       Impact factor: 54.908

4.  A simple cipher governs DNA recognition by TAL effectors.

Authors:  Matthew J Moscou; Adam J Bogdanove
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

5.  Enhancing gene editing specificity by attenuating DNA cleavage kinetics.

Authors:  Jeffrey C Miller; Deepak P Patil; Danny F Xia; Charles B Paine; Friedrich Fauser; Hunter W Richards; David A Shivak; Yuri R Bendaña; Sarah J Hinkley; Nicholas A Scarlott; Stephen C Lam; Andreas Reik; Yuanyue Zhou; David E Paschon; Patrick Li; Tenzin Wangzor; Gary Lee; Lei Zhang; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2019-07-29       Impact factor: 54.908

6.  Zinc fingers: a novel protein fold for nucleic acid recognition.

Authors:  A Klug; D Rhodes
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

7.  Hybrid restriction enzymes: zinc finger fusions to Fok I cleavage domain.

Authors:  Y G Kim; J Cha; S Chandrasegaran
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-06       Impact factor: 11.205

8.  Highly efficient endogenous human gene correction using designed zinc-finger nucleases.

Authors:  Fyodor D Urnov; Jeffrey C Miller; Ya-Li Lee; Christian M Beausejour; Jeremy M Rock; Sheldon Augustus; Andrew C Jamieson; Matthew H Porteus; Philip D Gregory; Michael C Holmes
Journal:  Nature       Date:  2005-04-03       Impact factor: 49.962

9.  In vivo genome editing restores haemostasis in a mouse model of haemophilia.

Authors:  Hojun Li; Virginia Haurigot; Yannick Doyon; Tianjian Li; Sunnie Y Wong; Anand S Bhagwat; Nirav Malani; Xavier M Anguela; Rajiv Sharma; Lacramiora Ivanciu; Samuel L Murphy; Jonathan D Finn; Fayaz R Khazi; Shangzhen Zhou; David E Paschon; Edward J Rebar; Frederic D Bushman; Philip D Gregory; Michael C Holmes; Katherine A High
Journal:  Nature       Date:  2011-06-26       Impact factor: 49.962

10.  ZFN-Mediated In Vivo Genome Editing Corrects Murine Hurler Syndrome.

Authors:  Li Ou; Russell C DeKelver; Michelle Rohde; Susan Tom; Robert Radeke; Susan J St Martin; Yolanda Santiago; Scott Sproul; Michael J Przybilla; Brenda L Koniar; Kelly M Podetz-Pedersen; Kanut Laoharawee; Renee D Cooksley; Kathleen E Meyer; Michael C Holmes; R Scott McIvor; Thomas Wechsler; Chester B Whitley
Journal:  Mol Ther       Date:  2018-11-01       Impact factor: 12.910

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