| Literature DB >> 32218360 |
Xin Yan1,2, Yuna Shimadate3, Atsushi Kato3, Yi-Xian Li1,2, Yue-Mei Jia1,2, George W J Fleet4,5, Chu-Yi Yu1,2,5.
Abstract
Ten pairs of pyrrolidine analogues of pochonicine and its stereoisomers have been synthesized from four enantiomeric pairs of polyhydroxylated cyclic nitrones. Among the ten N-acetylamino pyrrolidine analogues, only compounds with 2,5-dideoxy-2,5-imino-d-mannitol (DMDP) and pochonicine (1) configurations showed potent inhibition of β-N-acetylhexosaminidases (β-HexNAcases); while 1-amino analogues lost almost all their inhibitions towards the tested enzymes. The assay results reveal the importance of the N-acetylamino group and the possible right configurations of pyrrolidine ring required for this type of inhibitors.Entities:
Keywords: Pochonicine; iminosugars; pharmacophore; structure-activity relationship; synthesis; β-N-acetylhexosaminidase
Mesh:
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Year: 2020 PMID: 32218360 PMCID: PMC7180638 DOI: 10.3390/molecules25071498
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Naturally occurring potent N-acetylhexosaminidases (HexNAcase) inhibitors.
Figure 2Examples of synthetic HexNAcase inhibitors.
Figure 3Polyhydroxylated nitrones used in building pyrrolidine cores.
Scheme 1Synthesis of compound A-11 from l-arabino-nitrone (A).
Scheme 2Synthesis of monoacetylated compound A-10.
1-Amino and 1-N-acetylamino pyrrolidine analogues synthesized from cyclic nitrones.
| Entry | Cyclic Nitrone | Hydroxylamine | Diamine | Monoacetylated Pyrrolidine | 1-Amino Product | 1- |
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a Yield of the corresponding hydroxylamines starting from cyclic nitrones; b Total yield in 2 steps starting from hydroxylamines to diamines; c Yield of monoacetylated pyrrolidines from the corresponding diamines; d Hydrogenation yield of 1-amino products from diamines; e Hydrogenation yield of 1-N-acetylamino products from the corresponding monoacetylated pyrrolidines.
Concentrations of 1-N-acetylamino pyrrolidine analogues giving 50% inhibition of various enzymes.
| Enzyme | IC50 (μM) | ||||||||||
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| A-10 | 4·HCl | C-10 | D-10 | E-10a | F-10a | E-10b | F-10b | G-10 | H-10 | Pochonicine (1) | |
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| Yeast | NIa (0.5%)b | 450 | NI (0%) | NI (0%) | NI (0%) | NI (6.91%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | —c |
| Rice | 568 | 1000 | NI (18.2%) | NI (26.1%) | NI (15.9%) | NI (12.5%) | NI (0%) | NI (0%) | NI (0%) | NI (5.6%) | — |
| Rat intestinal maltase | 92 | 211 | NI (35.4%) | NI (9.24%) | NI (12.7%) | NI (14.6%) | NI (0%) | NI (12.7%) | NI (16.0%) | NI (13.6%) | — |
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| Almond | NI (16.1%) | 170 | NI (0%) | NI (41.0%) | NI (37.9%) | NI (11.6%) | NI (1.2%) | NI (19.8%) | NI (15.3%) | NI (17.1%) | — |
| Bovine liver | NI (2.0%) | NI (33.8%) | NI (1.0%) | NI (2.4%) | NI (4.1%) | NI (0.3%) | NI (0%) | NI (0%) | NI (0%) | NI (1.7%) | — |
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| Coffee beans | NI (0%) | NI (1.1%) | NI (0.36%) | 380 | NI (0.36%) | NI (0.36%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | — |
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| Bovine liver | NI (1.6%) | 511 | NI (1.3%) | NI (3.3%) | NI (4.9%) | NI (4.2%) | NI (3.9%) | NI (4.2%) | NI (2.9%) | NI (3.6%) | — |
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| Jack bean | NI (0%) | NI (0%) | NI (0.4%) | 205 | NI (0.7%) | NI (0%) | NI (3.8%) | NI (1.6%) | NI (4.0%) | NI (9.5%) | — |
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| Snail | NI (0%) | 296 | NI (0%) | NI (0%) | NI (25.8%) | NI (3.23%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | — |
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| Bovine kidney | NI (0%) | NI (1.5%) | NI (4.9%) | NI (1.7%) | NI (41.7%) | NI (8.4%) | NI (20.5%) | NI (3.9%) | NI (11.5%) | NI (22.3%) | — |
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| Porcine kidney | NI (4.3%) | NI (20.3%) | NI (0%) | NI (0%) | NI (5.6%) | NI (3.0%) | NI (0%) | NI (0%) | NI (5.6%) | NI (40.9%) | — |
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| | NI (5.5%) | NI (40.6%) | NI (1.9%) | NI (3.8%) | NI (4.0%) | NI (2.8%) | NI (6.4%) | NI (5.7%) | NI (7.6%) | NI (8.3%) | — |
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| | NI (10.1%) | NI (6.5%) | NI (3.6%) | NI (8.3%) | NI (11.8%) | NI (5.3%) | NI (30.8%) | NI (3.0%) | NI (9.5%) | NI (7.7%) | — |
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| | NI (0%) | NI (0.6%) | NI (0.3%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | — |
| Bovine liver | NI (4.6%) | NI (1.7%) | NI (0%) | NI (1.3%) | NI (0%) | NI (0%) | NI (4.3%) | NI (0%) | NI (0%) | NI (0%) | — |
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| Bovine liver | 943 | 4.7 | NI (36.3%) | 2.8 | 95 | NI (23.2%) | NI (38.4%) | 652 | 299 | NI (33.7%) | 0.021 [ |
| HL60 | NI (12.7%) | 34 | NI (3.9%) | 10 | 591 | NI (0%) | NI (4.5%) | NI (16.6%) | NI (18.8%) | NI (0.3%) | 0.018 [ |
| Jack bean | 202 | 0.21 | 129 | 0.12 | 10 | NI (42%) | 115 | 98 | 26 | 241 | 0.0016 [ |
| | — | — | — | — | — | — | — | — | — | — | 0.33 [ |
| Human placenta | — | — | — | — | — | — | — | — | — | — | 0.012 [ |
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| HL60 | NI (13.0%) | 9.5 | NI (1.4%) | 8.8 | 490 | NI (0.9%) | NI (10.1%) | NI (36.1%) | NI (15.9%) | NI (5.3%) | 0.049 [ |
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| Chicken liver | NI (0%) | NI (3.3%) | NI (6.1%) | 65.3 | NI (1.4%) | NI (0%) | NI (0.5%) | NI (2.3%) | NI (2.3%) | NI (6.1%) | NI (9.0%) [ |
a NI: No Inhibition (less than 50% at 1000 μM); b ( ): Inhibition % at 1000 μM; c —: Not determined.
Concentrations of 1-amino pyrrolidine analogues giving 50% inhibition of various enzymes.
| Enzyme | IC50 (μM) | |||||||||
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| A-11 | B-11 | C-11 | D-11 | E-11 | F-11a | E-11b | F-11b | G-11 | H-11 | |
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| Yeast | NIa (0%)b | NI (42.7%) | NI (9.55%) | NI (4.52%) | NI (9.55%) | NI (10.1%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) |
| Rice | 286 | 725 | NI (0%) | NI (8.4%) | NI (15.7%) | NI (31.5%) | NI (12.9%) | NI (16.9%) | NI (11.8%) | NI (3.4%) |
| Rat intestinal maltase | 68 | 251 | NI (37.1%) | NI (4.02%) | NI (9.95%) | NI (48.0%) | NI (10.9%) | NI (20.8%) | NI (%2.64) | NI (10.1%) |
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| Almond | NI (0%) | NI (44.4%) | NI (13.0%) | 419 | NI (12.4%) | NI (6.0%) | NI (4.8%) | NI (13.5%) | NI (2.3%) | NI (18.8%) |
| Bovine liver | NI (0%) | NI (16.2%) | NI (0.7%) | NI (3.1%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (3.8%) |
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| Coffee beans | NI (0%) | NI (0%) | NI (1.9%) | NI (42.2%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) |
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| Bovine liver | NI (1.0%) | NI (36.3%) | NI (2.6%) | NI (6.5%) | NI (2.0%) | NI (0%) | NI (0%) | NI (2.6%) | NI (0%) | NI (4.2%) |
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| Jack bean | NI (0%) | NI (0%) | NI (0%) | 54 | NI (0.32%) | NI (0.97%) | NI (12.1%) | NI (0%) | NI (5.19%) | NI (3.81%) |
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| Snail | NI (0%) | NI (0%) | NI (3.35%) | NI (2.23%) | NI (2.6%) | NI (1.9%) | NI (0%) | NI (0%) | NI (0%) | NI (1.2%) |
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| Bovine kidney | NI (13.1%) | NI (0%) | NI (39.9%) | NI (8.0%) | NI (21.2%) | NI (46.4%) | NI (19.9%) | NI (16.2%) | NI (16.2%) | NI (16.2%) |
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| Porcine kidney | NI (0%) | NI (4.7%) | NI (0.9%) | NI (0%) | NI (4.7%) | NI (0%) | NI (2.2%) | NI (0.6%) | NI (3.8%) | NI (0%) |
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| | NI (0.9%) | 589 | NI (0%) | NI (0.7%) | NI (9.1%) | NI (0%) | NI (0%) | NI (0%) | NI (1.1%) | NI (2.1%) |
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| | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (1.6%) | NI (1.6%) | NI (1.3%) |
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| | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) |
| Bovine liver | NI (0.8%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (5.7%) | NI (4.1%) | NI (0%) | NI (0%) | NI (4.9%) |
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| Bovine liver | NI (2.1%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) | NI (1.6%) | NI (1.6%) | NI (1.3%) |
| HL60 | NI (0%) | NI (0%) | NI (0%) | NI (3.1%) | NI (1.3%) | NI (2.7%) | NI (0%) | NI (0%) | NI (0%) | NI (0%) |
| Jack bean | NI (21.1%) | NI (14.5%) | NI (14.5%) | 99 | NI (19.3%) | NI (30.7%) | NI (23.5%) | 264 | NI (29.5%) | NI (7.2%) |
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| HL60 | NI (5.2%) | NI (3.8%) | NI (2.9%) | NI (14.8%) | NI (4.8%) | NI (6.0%) | NI (11.9%) | NI (8.1%) | NI (1.9%) | NI (0%) |
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| Chicken liver | NI (4.7%) | NI (7.5%) | NI (0.5%) | 44 | NI (0%) | NI (5.1%) | NI (0%) | NI (0%) | NI (13.6%) | NI (2.8%) |
a NI: No Inhibition (less than 50% at 1000 μM); b ( ): Inhibition % at 1000 μM.