Literature DB >> 32180121

Methods and application of coherent X-ray diffraction imaging of noncrystalline particles.

Masayoshi Nakasako1,2, Amane Kobayashi3,4, Yuki Takayama3,4,5, Kenta Asakura3,4, Mao Oide3,4, Koji Okajima3,4, Tomotaka Oroguchi3,4, Masaki Yamamoto4.   

Abstract

Microscopic imaging techniques have been developed to visualize events occurring in biological cells. Coherent X-ray diffraction imaging is one of the techniques applicable to structural analyses of cells and organelles, which have never been crystallized. In the experiment, a single noncrystalline particle is illuminated by an X-ray beam with almost complete spatial coherence. The structure of the particle projected along the direction of the beam is, in principle, retrieved from a finely recorded diffraction pattern alone by using iterative phase-retrieval algorithms. Here, we describe fundamental theory and experimental methods of coherent X-ray diffraction imaging and the recent application in structural studies of noncrystalline specimens by using X-rays available at Super Photon Ring of 8-Gev and SPring-8 Angstrom Compact Free Electron Laser in Japan.

Entities:  

Keywords:  Coherent X-ray diffraction imaging; Cryogenic experiment; Noncrystalline particle; Synchrotron radiation; Three-dimensional structure; X-ray free electron laser

Year:  2020        PMID: 32180121      PMCID: PMC7242594          DOI: 10.1007/s12551-020-00690-9

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  99 in total

1.  Femtosecond free-electron laser x-ray diffraction data sets for algorithm development.

Authors:  Stephan Kassemeyer; Jan Steinbrener; Lukas Lomb; Elisabeth Hartmann; Andrew Aquila; Anton Barty; Andrew V Martin; Christina Y Hampton; Saša Bajt; Miriam Barthelmess; Thomas R M Barends; Christoph Bostedt; Mario Bott; John D Bozek; Nicola Coppola; Max Cryle; Daniel P DePonte; R Bruce Doak; Sascha W Epp; Benjamin Erk; Holger Fleckenstein; Lutz Foucar; Heinz Graafsma; Lars Gumprecht; Andreas Hartmann; Robert Hartmann; Günter Hauser; Helmut Hirsemann; André Hömke; Peter Holl; Olof Jönsson; Nils Kimmel; Faton Krasniqi; Mengning Liang; Filipe R N C Maia; Stefano Marchesini; Karol Nass; Christian Reich; Daniel Rolles; Benedikt Rudek; Artem Rudenko; Carlo Schmidt; Joachim Schulz; Robert L Shoeman; Raymond G Sierra; Heike Soltau; John C H Spence; Dmitri Starodub; Francesco Stellato; Stephan Stern; Gunter Stier; Martin Svenda; Georg Weidenspointner; Uwe Weierstall; Thomas A White; Cornelia Wunderer; Matthias Frank; Henry N Chapman; Joachim Ullrich; Lothar Strüder; Michael J Bogan; Ilme Schlichting
Journal:  Opt Express       Date:  2012-02-13       Impact factor: 3.894

2.  Femtosecond dark-field imaging with an X-ray free electron laser.

Authors:  A V Martin; N D Loh; C Y Hampton; R G Sierra; F Wang; A Aquila; S Bajt; M Barthelmess; C Bostedt; J D Bozek; N Coppola; S W Epp; B Erk; H Fleckenstein; L Foucar; M Frank; H Graafsma; L Gumprecht; A Hartmann; R Hartmann; G Hauser; H Hirsemann; P Holl; S Kassemeyer; N Kimmel; M Liang; L Lomb; F R N C Maia; S Marchesini; K Nass; E Pedersoli; C Reich; D Rolles; B Rudek; A Rudenko; J Schulz; R L Shoeman; H Soltau; D Starodub; J Steinbrener; F Stellato; L Strüder; J Ullrich; G Weidenspointner; T A White; C B Wunderer; A Barty; I Schlichting; M J Bogan; H N Chapman
Journal:  Opt Express       Date:  2012-06-04       Impact factor: 3.894

3.  Cryogenic X-ray diffraction microscopy for biological samples.

Authors:  Enju Lima; Lutz Wiegart; Petra Pernot; Malcolm Howells; Joanna Timmins; Federico Zontone; Anders Madsen
Journal:  Phys Rev Lett       Date:  2009-11-05       Impact factor: 9.161

4.  Biological imaging by soft x-ray diffraction microscopy.

Authors:  David Shapiro; Pierre Thibault; Tobias Beetz; Veit Elser; Malcolm Howells; Chris Jacobsen; Janos Kirz; Enju Lima; Huijie Miao; Aaron M Neiman; David Sayre
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-11       Impact factor: 11.205

5.  Three-dimensional reconstruction of the giant mimivirus particle with an x-ray free-electron laser.

Authors:  Tomas Ekeberg; Martin Svenda; Chantal Abergel; Filipe R N C Maia; Virginie Seltzer; Jean-Michel Claverie; Max Hantke; Olof Jönsson; Carl Nettelblad; Gijs van der Schot; Mengning Liang; Daniel P DePonte; Anton Barty; M Marvin Seibert; Bianca Iwan; Inger Andersson; N Duane Loh; Andrew V Martin; Henry Chapman; Christoph Bostedt; John D Bozek; Ken R Ferguson; Jacek Krzywinski; Sascha W Epp; Daniel Rolles; Artem Rudenko; Robert Hartmann; Nils Kimmel; Janos Hajdu
Journal:  Phys Rev Lett       Date:  2015-03-02       Impact factor: 9.161

6.  TAKASAGO-6 apparatus for cryogenic coherent X-ray diffraction imaging of biological non-crystalline particles using X-ray free electron laser at SACLA.

Authors:  Amane Kobayashi; Yuki Sekiguchi; Yuki Takayama; Tomotaka Oroguchi; Keiya Shirahama; Yasufumi Torizuka; Masahiro Manoda; Masayoshi Nakasako; Masaki Yamamoto
Journal:  Rev Sci Instrum       Date:  2016-05       Impact factor: 1.523

7.  Common structural features of toxic intermediates from α-synuclein and GroES fibrillogenesis detected using cryogenic coherent X-ray diffraction imaging.

Authors:  Hiroshi Kameda; Sayaka Usugi; Mana Kobayashi; Naoya Fukui; Seki Lee; Kunihiro Hongo; Tomohiro Mizobata; Yuki Sekiguchi; Yu Masaki; Amane Kobayashi; Tomotaka Oroguchi; Masayoshi Nakasako; Yuki Takayama; Masaki Yamamoto; Yasushi Kawata
Journal:  J Biochem       Date:  2016-08-18       Impact factor: 3.387

8.  Production of large numbers of mitotic mammalian cells by use of the reversible microtubule inhibitor nocodazole. Nocodazole accumulated mitotic cells.

Authors:  G W Zieve; D Turnbull; J M Mullins; J R McIntosh
Journal:  Exp Cell Res       Date:  1980-04       Impact factor: 3.905

9.  Signal enhancement and Patterson-search phasing for high-spatial-resolution coherent X-ray diffraction imaging of biological objects.

Authors:  Yuki Takayama; Saori Maki-Yonekura; Tomotaka Oroguchi; Masayoshi Nakasako; Koji Yonekura
Journal:  Sci Rep       Date:  2015-01-28       Impact factor: 4.379

10.  Three-dimensional coherent X-ray diffractive imaging of whole frozen-hydrated cells.

Authors:  Jose A Rodriguez; Rui Xu; Chien-Chun Chen; Zhifeng Huang; Huaidong Jiang; Allan L Chen; Kevin S Raines; Alan Pryor; Daewoong Nam; Lutz Wiegart; Changyong Song; Anders Madsen; Yuriy Chushkin; Federico Zontone; Peter J Bradley; Jianwei Miao
Journal:  IUCrJ       Date:  2015-08-20       Impact factor: 4.769

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  2 in total

1.  Biophysical Reviews' national biophysical society partnership program.

Authors:  Damien Hall
Journal:  Biophys Rev       Date:  2020-04-29

Review 2.  Illuminating the Brain With X-Rays: Contributions and Future Perspectives of High-Resolution Microtomography to Neuroscience.

Authors:  Paulla Vieira Rodrigues; Katiane Tostes; Beatriz Pelegrini Bosque; João Vitor Pereira de Godoy; Dionisio Pedro Amorim Neto; Carlos Sato Baraldi Dias; Matheus de Castro Fonseca
Journal:  Front Neurosci       Date:  2021-03-17       Impact factor: 4.677

  2 in total

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