Literature DB >> 27539923

Common structural features of toxic intermediates from α-synuclein and GroES fibrillogenesis detected using cryogenic coherent X-ray diffraction imaging.

Hiroshi Kameda1, Sayaka Usugi1, Mana Kobayashi1, Naoya Fukui1, Seki Lee1, Kunihiro Hongo1, Tomohiro Mizobata1, Yuki Sekiguchi2,3, Yu Masaki2,3, Amane Kobayashi2,3, Tomotaka Oroguchi2,3, Masayoshi Nakasako2,3, Yuki Takayama3, Masaki Yamamoto3, Yasushi Kawata4.   

Abstract

The aggregation and deposition of α-synuclein (αSyn) in neuronal cells is correlated to pathogenesis of Parkinson's disease. Although the mechanism of αSyn aggregation and fibril formation has been studied extensively, the structural hallmarks that are directly responsible for toxicity toward cells are still under debate. Here, we have compared the structural characteristics of the toxic intermediate molecular species of αSyn and similar toxic species of another protein, GroES, using coherent X-ray diffraction analysis. Using coherent X-ray free electron laser pulses of SACLA, we analysed αSyn and GroES fibril intermediate species and characterized various aggregate structures. Unlike previous studies where an annular oligomeric form of αSyn was identified, particle reconstruction from scattering traces suggested that the specific forms of the toxic particles were varied, with the sizes of the particles falling within a specific range. We did however discover a common structural feature in both αSyn and GroES samples; the edges of the detected particles were nearly parallel and produced a characteristic diffraction pattern in the diffraction experiments. The presence of parallel-edged particles in toxic intermediates of αSyn and GroES fibrillogenesis pointed towards a plausible common molecular interface that leads to the formation of mature fibrils.
© The Authors 2016. Published by Oxford University Press on behalf of the Japanese Biochemical Society. All rights reserved.

Entities:  

Keywords:  GroES; XFEL-CXDI; amyloid fibril; toxic intermediate; α-synuclein

Mesh:

Substances:

Year:  2016        PMID: 27539923     DOI: 10.1093/jb/mvw052

Source DB:  PubMed          Journal:  J Biochem        ISSN: 0021-924X            Impact factor:   3.387


  4 in total

Review 1.  Formation and properties of amyloid fibrils of prion protein.

Authors:  Kei-Ichi Yamaguchi; Kazuo Kuwata
Journal:  Biophys Rev       Date:  2017-12-04

Review 2.  Methods and application of coherent X-ray diffraction imaging of noncrystalline particles.

Authors:  Masayoshi Nakasako; Amane Kobayashi; Yuki Takayama; Kenta Asakura; Mao Oide; Koji Okajima; Tomotaka Oroguchi; Masaki Yamamoto
Journal:  Biophys Rev       Date:  2020-03-16

3.  Common architectures in cyanobacteria Prochlorococcus cells visualized by X-ray diffraction imaging using X-ray free electron laser.

Authors:  Amane Kobayashi; Yuki Takayama; Takeshi Hirakawa; Koji Okajima; Mao Oide; Tomotaka Oroguchi; Yayoi Inui; Masaki Yamamoto; Sachihiro Matsunaga; Masayoshi Nakasako
Journal:  Sci Rep       Date:  2021-02-16       Impact factor: 4.379

4.  An α-synuclein decoy peptide prevents cytotoxic α-synuclein aggregation caused by fatty acid binding protein 3.

Authors:  Naoya Fukui; Hanae Yamamoto; Moe Miyabe; Yuki Aoyama; Kunihiro Hongo; Tomohiro Mizobata; Ichiro Kawahata; Yasushi Yabuki; Yasuharu Shinoda; Kohji Fukunaga; Yasushi Kawata
Journal:  J Biol Chem       Date:  2021-04-13       Impact factor: 5.157

  4 in total

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