Literature DB >> 22418172

Femtosecond free-electron laser x-ray diffraction data sets for algorithm development.

Stephan Kassemeyer1, Jan Steinbrener, Lukas Lomb, Elisabeth Hartmann, Andrew Aquila, Anton Barty, Andrew V Martin, Christina Y Hampton, Saša Bajt, Miriam Barthelmess, Thomas R M Barends, Christoph Bostedt, Mario Bott, John D Bozek, Nicola Coppola, Max Cryle, Daniel P DePonte, R Bruce Doak, Sascha W Epp, Benjamin Erk, Holger Fleckenstein, Lutz Foucar, Heinz Graafsma, Lars Gumprecht, Andreas Hartmann, Robert Hartmann, Günter Hauser, Helmut Hirsemann, André Hömke, Peter Holl, Olof Jönsson, Nils Kimmel, Faton Krasniqi, Mengning Liang, Filipe R N C Maia, Stefano Marchesini, Karol Nass, Christian Reich, Daniel Rolles, Benedikt Rudek, Artem Rudenko, Carlo Schmidt, Joachim Schulz, Robert L Shoeman, Raymond G Sierra, Heike Soltau, John C H Spence, Dmitri Starodub, Francesco Stellato, Stephan Stern, Gunter Stier, Martin Svenda, Georg Weidenspointner, Uwe Weierstall, Thomas A White, Cornelia Wunderer, Matthias Frank, Henry N Chapman, Joachim Ullrich, Lothar Strüder, Michael J Bogan, Ilme Schlichting.   

Abstract

We describe femtosecond X-ray diffraction data sets of viruses and nanoparticles collected at the Linac Coherent Light Source. The data establish the first large benchmark data sets for coherent diffraction methods freely available to the public, to bolster the development of algorithms that are essential for developing this novel approach as a useful imaging technique. Applications are 2D reconstructions, orientation classification and finally 3D imaging by assembling 2D patterns into a 3D diffraction volume.

Year:  2012        PMID: 22418172     DOI: 10.1364/OE.20.004149

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  18 in total

Review 1.  A minimal view of single-particle imaging with X-ray lasers.

Authors:  N Duane Loh
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

Review 2.  Methods and application of coherent X-ray diffraction imaging of noncrystalline particles.

Authors:  Masayoshi Nakasako; Amane Kobayashi; Yuki Takayama; Kenta Asakura; Mao Oide; Koji Okajima; Tomotaka Oroguchi; Masaki Yamamoto
Journal:  Biophys Rev       Date:  2020-03-16

Review 3.  Emerging opportunities in structural biology with X-ray free-electron lasers.

Authors:  Ilme Schlichting; Jianwei Miao
Journal:  Curr Opin Struct Biol       Date:  2012-08-22       Impact factor: 6.809

4.  Data processing software suite SITENNO for coherent X-ray diffraction imaging using the X-ray free-electron laser SACLA.

Authors:  Yuki Sekiguchi; Tomotaka Oroguchi; Yuki Takayama; Masayoshi Nakasako
Journal:  J Synchrotron Radiat       Date:  2014-03-15       Impact factor: 2.616

5.  The Atomic, Molecular and Optical Science instrument at the Linac Coherent Light Source.

Authors:  Ken R Ferguson; Maximilian Bucher; John D Bozek; Sebastian Carron; Jean-Charles Castagna; Ryan Coffee; G Ivan Curiel; Michael Holmes; Jacek Krzywinski; Marc Messerschmidt; Michael Minitti; Ankush Mitra; Stefan Moeller; Peter Noonan; Timur Osipov; Sebastian Schorb; Michele Swiggers; Alexander Wallace; Jing Yin; Christoph Bostedt
Journal:  J Synchrotron Radiat       Date:  2015-04-17       Impact factor: 2.616

6.  Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser.

Authors:  Tomas Ekeberg; Martin Svenda; M Marvin Seibert; Chantal Abergel; Filipe R N C Maia; Virginie Seltzer; Daniel P DePonte; Andrew Aquila; Jakob Andreasson; Bianca Iwan; Olof Jönsson; Daniel Westphal; Duško Odić; Inger Andersson; Anton Barty; Meng Liang; Andrew V Martin; Lars Gumprecht; Holger Fleckenstein; Saša Bajt; Miriam Barthelmess; Nicola Coppola; Jean-Michel Claverie; N Duane Loh; Christoph Bostedt; John D Bozek; Jacek Krzywinski; Marc Messerschmidt; Michael J Bogan; Christina Y Hampton; Raymond G Sierra; Matthias Frank; Robert L Shoeman; Lukas Lomb; Lutz Foucar; Sascha W Epp; Daniel Rolles; Artem Rudenko; Robert Hartmann; Andreas Hartmann; Nils Kimmel; Peter Holl; Georg Weidenspointner; Benedikt Rudek; Benjamin Erk; Stephan Kassemeyer; Ilme Schlichting; Lothar Strüder; Joachim Ullrich; Carlo Schmidt; Faton Krasniqi; Günter Hauser; Christian Reich; Heike Soltau; Sebastian Schorb; Helmut Hirsemann; Cornelia Wunderer; Heinz Graafsma; Henry Chapman; Janos Hajdu
Journal:  Sci Data       Date:  2016-08-01       Impact factor: 6.444

7.  High-resolution structure of viruses from random diffraction snapshots.

Authors:  A Hosseinizadeh; P Schwander; A Dashti; R Fung; R M D'Souza; A Ourmazd
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

8.  Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods.

Authors:  Shufen Ma; Haiguang Liu
Journal:  J Appl Crystallogr       Date:  2016-03-18       Impact factor: 3.304

9.  The linac coherent light source single particle imaging road map.

Authors:  A Aquila; A Barty; C Bostedt; S Boutet; G Carini; D dePonte; P Drell; S Doniach; K H Downing; T Earnest; H Elmlund; V Elser; M Gühr; J Hajdu; J Hastings; S P Hau-Riege; Z Huang; E E Lattman; F R N C Maia; S Marchesini; A Ourmazd; C Pellegrini; R Santra; I Schlichting; C Schroer; J C H Spence; I A Vartanyants; S Wakatsuki; W I Weis; G J Williams
Journal:  Struct Dyn       Date:  2015-04-21       Impact factor: 2.920

10.  CFEL-ASG Software Suite (CASS): usage for free-electron laser experiments with biological focus.

Authors:  Lutz Foucar
Journal:  J Appl Crystallogr       Date:  2016-06-23       Impact factor: 3.304

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