Literature DB >> 25793853

Three-dimensional reconstruction of the giant mimivirus particle with an x-ray free-electron laser.

Tomas Ekeberg1, Martin Svenda1, Chantal Abergel2, Filipe R N C Maia1,3, Virginie Seltzer2, Jean-Michel Claverie2, Max Hantke1, Olof Jönsson1, Carl Nettelblad1, Gijs van der Schot1, Mengning Liang4, Daniel P DePonte4, Anton Barty4, M Marvin Seibert1,5, Bianca Iwan1,6, Inger Andersson1, N Duane Loh7, Andrew V Martin8, Henry Chapman4,9, Christoph Bostedt5, John D Bozek5, Ken R Ferguson5, Jacek Krzywinski5, Sascha W Epp10, Daniel Rolles10,11, Artem Rudenko11, Robert Hartmann12, Nils Kimmel13,14, Janos Hajdu1,15.   

Abstract

We present a proof-of-concept three-dimensional reconstruction of the giant mimivirus particle from experimentally measured diffraction patterns from an x-ray free-electron laser. Three-dimensional imaging requires the assembly of many two-dimensional patterns into an internally consistent Fourier volume. Since each particle is randomly oriented when exposed to the x-ray pulse, relative orientations have to be retrieved from the diffraction data alone. We achieve this with a modified version of the expand, maximize and compress algorithm and validate our result using new methods.

Mesh:

Year:  2015        PMID: 25793853     DOI: 10.1103/PhysRevLett.114.098102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  74 in total

1.  A science education model for large collaborative centers.

Authors:  William J Bauer; Sarah B Woodruff
Journal:  Struct Dyn       Date:  2021-03-05       Impact factor: 2.920

2.  Conformational landscape of a virus by single-particle X-ray scattering.

Authors:  Ahmad Hosseinizadeh; Ghoncheh Mashayekhi; Jeremy Copperman; Peter Schwander; Ali Dashti; Reyhaneh Sepehr; Russell Fung; Marius Schmidt; Chun Hong Yoon; Brenda G Hogue; Garth J Williams; Andrew Aquila; Abbas Ourmazd
Journal:  Nat Methods       Date:  2017-08-14       Impact factor: 28.547

3.  Reconstruction from limited single-particle diffraction data via simultaneous determination of state, orientation, intensity, and phase.

Authors:  Jeffrey J Donatelli; James A Sethian; Peter H Zwart
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

Review 4.  Methods and application of coherent X-ray diffraction imaging of noncrystalline particles.

Authors:  Masayoshi Nakasako; Amane Kobayashi; Yuki Takayama; Kenta Asakura; Mao Oide; Koji Okajima; Tomotaka Oroguchi; Masaki Yamamoto
Journal:  Biophys Rev       Date:  2020-03-16

5.  Complex Membrane Remodeling during Virion Assembly of the 30,000-Year-Old Mollivirus Sibericum.

Authors:  E R Quemin; S Corroyer-Dulmont; A Baskaran; E Penard; A D Gazi; E Christo-Foroux; P Walther; C Abergel; J Krijnse-Locker
Journal:  J Virol       Date:  2019-06-14       Impact factor: 5.103

6.  Tree-Code Based Improvement of Computational Performance of the X-ray-Matter-Interaction Simulation Tool XMDYN.

Authors:  Michal Stransky; Zoltan Jurek; Robin Santra; Adrian P Mancuso; Beata Ziaja
Journal:  Molecules       Date:  2022-06-30       Impact factor: 4.927

7.  Low-dose shift- and rotation-invariant diffraction recognition imaging.

Authors:  Tatiana Latychevskaia; Alice Kohli
Journal:  Sci Rep       Date:  2022-07-01       Impact factor: 4.996

Review 8.  Metalloprotein structures at ambient conditions and in real-time: biological crystallography and spectroscopy using X-ray free electron lasers.

Authors:  Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Curr Opin Struct Biol       Date:  2015-09-02       Impact factor: 6.809

9.  On the release of cppxfel for processing X-ray free-electron laser images.

Authors:  Helen Mary Ginn; Gwyndaf Evans; Nicholas K Sauter; David Ian Stuart
Journal:  J Appl Crystallogr       Date:  2016-05-11       Impact factor: 3.304

10.  Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses.

Authors:  Ruslan P Kurta; Jeffrey J Donatelli; Chun Hong Yoon; Peter Berntsen; Johan Bielecki; Benedikt J Daurer; Hasan DeMirci; Petra Fromme; Max Felix Hantke; Filipe R N C Maia; Anna Munke; Carl Nettelblad; Kanupriya Pande; Hemanth K N Reddy; Jonas A Sellberg; Raymond G Sierra; Martin Svenda; Gijs van der Schot; Ivan A Vartanyants; Garth J Williams; P Lourdu Xavier; Andrew Aquila; Peter H Zwart; Adrian P Mancuso
Journal:  Phys Rev Lett       Date:  2017-10-12       Impact factor: 9.161

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