| Literature DB >> 32164357 |
Halina Maniak1, Michał Talma2, Konrad Matyja1, Anna Trusek1, Mirosław Giurg3.
Abstract
A series of hydrazide-hydrazones 1-3, the imine derivatives of hydrazides and aldehydes bearing benzene rings, were screened as inhibitors of laccase from Trametes versicolor. Laccase is a copper-containing enzyme which inhibition might prevent or reduce the activity of the plant pathogens that produce it in various biochemical processes. The kinetic and molecular modeling studies were performed and for selected compounds, the docking results were discussed. Seven 4-hydroxybenzhydrazide (4-HBAH) derivatives exhibited micromolar activity Ki = 24-674 µM with the predicted and desirable competitive type of inhibition. The structure-activity relationship (SAR) analysis revealed that a slim salicylic aldehyde framework had a pivotal role in stabilization of the molecules near the substrate docking site. Furthermore, the presence of phenyl and bulky tert-butyl substituents in position 3 in salicylic aldehyde fragment favored strong interaction with the substrate-binding pocket in laccase. Both 3- and 4-HBAH derivatives containing larger 3-tert-butyl-5-methyl- or 3,5-di-tert-butyl-2-hydroxy-benzylidene unit, did not bind to the active site of laccase and, interestingly, acted as non-competitive (Ki = 32.0 µM) or uncompetitive (Ki = 17.9 µM) inhibitors, respectively. From the easily available laccase inhibitors only sodium azide, harmful to environment and non-specific, was over 6 times more active than the above compounds.Entities:
Keywords: 4-hydroxybenzhydrazide; hydrazones; oxidoreductase; salicylaldehyde derivatives
Mesh:
Substances:
Year: 2020 PMID: 32164357 PMCID: PMC7179439 DOI: 10.3390/molecules25051255
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Oxidation mechanism through the laccase and laccase-mediator system (modified from [20]).
Figure 1Representative synthetic (upper row) and natural (lower row) laccase mediators (based on [22,24]).
Characteristics of hydrazide-hydrazones 1a–j, 2a–h, and 3a–g.
| No. | R | R1 | R2 | Rx time | Yield(%) | Mp (°C) | Mp lit.(°C) | Lit. |
|---|---|---|---|---|---|---|---|---|
|
| Ph | OH | H | 2h | 96 | 242.0–244.0 | 240–242 | [ |
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| C6H5CH2CH2 | OH | H | 6h | 72 | 243.5–244.0 | – | [ |
|
| 4-MeC6H4 | OH | H | 2h | 80 | 246.0–247.0 | 252.6 | [ |
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| 2-NaSO3C6H4 | OH | H | 2h | 97 | 251 dec. | – | – |
|
| 2-HOC6H4 | OH | H | 2h | 86 | 265.0–266.5 | 257–258 | [ |
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| 3-HOC6H4 | OH | H | 2h | 93 a | 254 dec. | >250 | [ |
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| 4-HOC6H4 | OH | H | 2h | 96 b | 261 dec. | 265 | [ |
|
| 2-MeOC6H4 | OH | H | 4h | 91 | 236.0–237.0 | 230–231 | [ |
|
| 3-MeOC6H4 | OH | H | 5h | 79 | 210.0–212.0 | 205–206 | [ |
|
| 4-MeOC6H4 | OH | H | 5h | 82 | 223.0–224.0 | 220–221 | [ |
|
| 2-HO-3-PhC6H3 | OH | H | 6h | 85 c | 215.0–218.0 | – | – |
|
| 2-HO-3- | OH | H | 6h | 93 | 240.0–242.0 | – | – |
|
| 2,4-(HO)2C6H3 | OH | H | 2h | 90 | 294 dec. | – | [ |
|
| 2-HO-5-BrC6H3 | OH | H | 3h | 90 | 276.0–278.0 | 279–280 | [ |
|
| 2-HO-6-MeOC6H3 | OH | H | 2h | 71 | 256.5–257.5 | – | – |
|
| 2,6-(MeO)2C6H3 | OH | H | 6h | 97 | 214.5–216.0 | – | – |
|
| 3-MeO-4-HOC6H3 | OH | H | 3h | 100 | 218.5–220.0 | 226–227 | [ |
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| 2-HO-3-PhC6H3 | OMe | H | 3h | 84 | 240.0–242.5 | – | – |
|
| 2-HO-3-CH2OH-5-MeC6H2 | OH | H | 3h | 77 | 229.0–230.0 | – | – |
|
| 2-HO-3-Me-5-CH2OHC6H2 | OH | H | 3h | 86 | 266 dec. | – | – |
|
| 2-HO-3,5-( | OH | H | 6h | 93.5 | 274.5–275.5 | – | – |
|
| 2-HO-3- | OH | H | 2h | 76 | 261.0–262.0 | – | – |
|
| 2-HO-3- | OH | H | 6h | 94.5 | 258.5–260.5 | – | – |
|
| 2-HO-4,6-(MeO)2C6H2 | OH | H | 5h | 99 | 231.5–234.5 | – | – |
|
| 2-HO-3- | H | OH | 2h | 94 | 240.0–242.5 | – | – |
a Monohydrate was isolated, b Crystallize with 1/3 molecule of CH3OH, c Crystallize with one molecule of CH3OH.
Scheme 2Hydrazide-hydrazones 1a–j, 2a–h, 3a–g, 4-methoxybenzoic acid hydrazide (4b), and 3-hydroxybenzoic acid hydrazide (4c) preparations. Reagents and conditions: a) CH3OH, cat. AcOH, reflux, 2–6h, b) CH3OH, cat. SOCl2, reflux, 20–48h, c) H2NNH2 × H2O, CH3OH, reflux, 48h.
Scheme 3The key aldehydes 6a–b, 6d–f, 7a–b, 7d–f preparation. Reagents and conditions: a) (i) NaH, ClMOM, THF, 0 °C; (ii) LICTMEDA, DEE, 0 °C, 1h; (iii) DMF, −75 °C; (iv) HCl, RT, 1h (carried out in accordance with [54]) b) (i) iPrNCO, cat. DMAP, THF, reflux; (ii) TMEDATMSOTf, DEE, RT; (iii) LICTMEDA, −78 °C, 1h; (iv) DMF, −78 °C; (v) NaOH, EtOH, RT; (vi) HCl, −78 °C to RT, total 86% (carried out in accordance with [62]), c) (i) KOH or NaOH, CHCl3, EtOH and/or H2O, 60–65 °C; (ii) HCl (carried out in accordance with [55,64]), d) (i) paraformaldehyde, toluene, cat., SnCl4 and (n-Bu)3N, RT to 100 °C, 8h at 100 °C; (ii) HCl aq. (carried out in accordance with [60]), e) (i) LICTMEDA, THF, 0 °C; (ii) DMF, 0 °C; (iii) HCl (carried out in accordance with [58]), f) AlCl3, DCM (carried out in accordance with [57]), g) HCHO, H2O, 80 °C, 1h (carried out in accordance with [56]), h) MnO2, acetone, RT, 6h (carried out in accordance with [59]).
Structures of the hydrazide-hydrazones 1a–j, 2a–h, 3a–g and their inhibition constants (Ki) determined for laccase from Trametes versicolor, and the skeleton numbering system. Significant inhibition is marked in bold. The activity of the reference compounds, 4-hydroxybutylacrylate (4-HBA), and NaN3 (a dioxygen reduction centre inhibitor), are given.
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| Ph | 1468 ± 58 a |
| 2-HO-6-MeOC6H3 | ≥1000 c |
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| C6H5CH2CH2 | 1919 ± 163 b |
| 2,6-(MeO)2C6H3 | ≥1000 c |
|
| 4-MeC6H4 |
|
| 3-MeO-4-HOC6H3 |
|
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| 2-NaSO3C6H4 | ≥2400 c |
| – | ≥1000 c |
|
| 2-HOC6H4 | 674 ± 10 a |
| 2-HO-3-CH2OH-5-MeC6H2 | ≥1000 c |
|
| 3-HOC6H4 | 2396 ± 334 a |
| 2-HO-3-Me-5-CH2OHC6H2 | ≥1000 c |
|
| 4-HOC6H4 | 638 ± 35 b |
| 2-HO-3,5-( |
|
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| 2-MeOC6H4 | 1064 ± 18 a |
| 2-HO-3- |
|
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| 3-MeOC6H4 | 416 ± 1.5 a |
| 2-HO-3- | ≥1000 c |
|
| 4-MeOC6H4 | ≥2400 c |
| 2-HO-4,6-(MeO)2C6H2 | ≥1000 c |
|
| 2-HO-3-PhC6H3 |
|
| – |
|
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| 2-HO-3- |
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| 4-HBAH | ≥2400 c |
|
| 2,4-(HO)2C6H3 | 939 ± 30 b | control | 4-HBA | ≥2400 c |
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| 2-HO-5-BrC6H3 | ≥1000 c | control | NaN3 | 2.72 ± 0.3 d |
The type of inhibition: a competitive; b uncompetitive; c not determined; d non-competitive.
Figure 2The representative Lineweaver-Burk plots 1/V [min µmol−1] = f(1/CS) [µM–1] for laccase from Trametes versicolor in the presence of hydrazide-hydrazone 2b (A) and hydrazide-hydrazone 3c (B) tested in the range of concentrations 10–200 µM and 10–40 µM, respectively.
Figure 3The preferential structure of hydrazide-hydrazones as inhibitors of laccase from T. versicolor.
Figure 4Structure of laccase enzyme from Trametes versicolor (PDB: 1GYC) with the syringaldazine in the active substrate centre. The interactions are shown as green dashed lines. The distance of the ligand to His-458 is 3.212 Å and is shown as regular green line. The copper ion (type 1) is shown as an orange sphere.
Figure 5The representation of 1c (A), 2b (B), 3d (C), 3g (D) compounds interactions in the active site of laccase from Trametes versicolor (PDB: 1GYC). The copper ions are shown as orange spheres. A surface of the enzyme (A–D) represents the hydrophobicity of nearby amino acid side chains.
Figure 6Interaction of hydrazide-hydrazones 3c and 3g on the surface of laccase (PDB: 1GYC): (A). The red arrow indicates the oxygen tunnel (B); the copper ions (type 2 and 3) are shown as orange spheres.