Halina Maniak1, Michał Talma2, Mirosław Giurg3. 1. Department of Micro, Nano and Bioprocess Engineering, Faculty of Chemistry, Wroclaw University of Science and Technology, Norwida 4/6, 50-373 Wrocław, Poland. 2. Department of Bioorganic Chemistry, Faculty of Chemistry, Wroclaw University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland. 3. Department of Organic and Medicinal Chemistry, Faculty of Chemistry, Wroclaw University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.
Abstract
Laccase from pathogenic fungi participates in both the delignification and neutralization of phytoantibiotics. Furthermore, it interferes with the hormone signaling in plants and catalyzes melanization. Infections of these pathogens contribute to loss in forestry, agriculture, and horticulture. As there is still a need to expand knowledge on efficient defense strategies against phytopathogenic fungi, the present study aimed to reveal more information on the molecular mechanisms of laccase inhibition with natural and natural-like carboxylic acid semi-synthetic derivatives. A set of hydrazide-hydrazones derived from carboxylic acids, generally including electron-rich arene units that serve as a decoy substrate, was synthesized and tested with laccase from Trametes versicolor. The classic synthesis of the title inhibitors proceeded with good to almost quantitative yield. Ninety percent of the tested molecules were active in the range of KI = 8-233 µM and showed different types of action. Such magnitude of inhibition constants qualified the hydrazide-hydrazones as strong laccase inhibitors. Molecular docking studies supporting the experimental data explained the selected derivatives' interactions with the enzyme. The results are promising in developing new potential antifungal agents mitigating the damage scale in the plant cultivation, gardening, and horticulture sectors.
Laccase from pathogenic fungi participates in both the delignification and neutralization of phytoantibiotics. Furthermore, it interferes with the hormone signaling in plants and catalyzes melanization. Infections of these pathogens contribute to loss in forestry, agriculture, and horticulture. As there is still a need to expand knowledge on efficient defense strategies against phytopathogenic fungi, the present study aimed to reveal more information on the molecular mechanisms of laccase inhibition with natural and natural-like carboxylic acid semi-synthetic derivatives. A set of hydrazide-hydrazones derived from carboxylic acids, generally including electron-rich arene units that serve as a decoy substrate, was synthesized and tested with laccase from Trametes versicolor. The classic synthesis of the title inhibitors proceeded with good to almost quantitative yield. Ninety percent of the tested molecules were active in the range of KI = 8-233 µM and showed different types of action. Such magnitude of inhibition constants qualified the hydrazide-hydrazones as strong laccase inhibitors. Molecular docking studies supporting the experimental data explained the selected derivatives' interactions with the enzyme. The results are promising in developing new potential antifungal agents mitigating the damage scale in the plant cultivation, gardening, and horticulture sectors.
Laccase (benzenediol: oxygen oxidoreductase, EC 1.10.3.2) is a blue multi-copper oxidase specific to a broad group of electron-rich arenes such as anilines and phenols. It has the exceptional ability to one electron oxidize both low- and high-molecular-weight substrates via direct or mediated reactions applied in green chemistry [1]. This nonspecific property has been reflected in numerous industrial, medical, and environmental applications [2,3,4,5]. Prokaryotes [6] and eukaryotes such as insects [7], plants, and fungi [8] produce laccase. Among the fungi, Ascomycota and Basidiomycota are well-known producers of this enzyme. Laccase participates in fungal metabolic pathways such as developing fruit bodies, the pigmentation of spores, and sexual differentiation [9]. It is also known as the virulence factor involved in the pathogenicity of humans [10,11,12] and plants [13,14,15,16]. Among the most troublesome filamentous fungi that produce laccase are Botrytis cinerea [17,18], Sclerotinia sclerotiorum [19], and Rhizoctonia sp. [20,21]. Furthermore, fungi parasitizing on trees use this enzyme in the degradation of lignin. Fungi release laccase into the plant tissues. It catalyzes lignin decomposition and neutralization of the auxins and phytoalexins, a primary barrier against pathogen attack. Such an infection strategy contributes to white-root of wood, crop, and ornamental plants diseases resulting in an enormous ecological and economic loss in forestry and agriculture [22,23].Laccase inhibitors are a diversified group of organic and inorganic compounds [24]. To date, only a few examples of natural-derived compounds with inhibition potency towards laccase have been reported (Figure 1) [25,26,27,28]. These are hard-to-access medicarpin isolated from Dalbergia congestiflora Pittier heartwood [25], ptylomycalin A isolated from the marine sponge Monanchora arbuscula [26], and a mixture of humic acids with an undefined composition [27]. Another example is a semi-synthetic hydrazide-hydrazone, the derivative of coumarin and gentisaldehyde (2,5-dihydroxybenzaldehyde) [28]. Among them, the humic acids seem to be applicable as laccase inhibitors because of their environmental abundance. Nonetheless, the studies on laccase inhibition had only a preliminary character. Unfortunately, their applications have disadvantages because of the undefined chemical structure of the humic acid mixture [27] and their activity against a broad range of enzymes [29].
Figure 1
Structures of laccase inhibitors: ptylomycalin A, medicarpin, and coumarin hydrazone.
Hydrazide-hydrazones are usually crystalline, easily available organic compounds. They may be synthesized in organic solvents [30] in the presence, or without, of acid additives with generally good to quantitative yields [31]. These are composed of carbonyl compounds linked by the hydrazine unit with carboxylic acid (RR′C=N–NH–(C=O)R″) or sulfonic acids (RR′C=N–NH–(SO2)R″) fragments [32]. They undergo easy dehydration to 1,3,4-oxadiazoles that present a variety of biological activities [33,34]. Hydrazide-hydrazones provide interesting properties in the field of supramolecular architecture [35,36,37,38,39], organic synthesis [33,40], chemo- and physical imaging [41,42,43,44], coordination [45,46,47,48,49], and in inorganic chemistry [50,51,52,53]. The numerous biologically active hydrazide-hydrazones are particularly worth paying attention to [54]. Depending on the character of the present functional groups, these molecules are anticancer [43,55,56,57,58], antimicrobial [32,59,60,61,62], antiviral agents [63,64], and enzyme inhibitors [31,48,65,66,67,68,69,70,71,72,73,74,75,76,77,78]. Depending on the class of inhibited enzymes, the latter group may be further divided into monoamine oxidases [67,71,79], lipid metabolism enzymes [74,75], and metalloenzyme inhibitors [31,65,66,68,69,70,77,78,80]. Nevertheless, knowledge about the hydrazide-hydrazones as inhibitors of metalloenzymes is still limited only to several studies reported in the literature so far. These compounds differ from the acyl unit, a heterocycle such as an imidazole, pyrazole, thiazole, or pyridyl derivatives, or an alkylated and/or electron-rich substituted benzene ring. There is no simple pattern that could link the activity of the hydrazide-hydrazones with metalloenzymes. In some cases, the hydrazide unit might act as a chelator agent of O and N coordination centers. Still, depending on the location of metal atoms in the protein, this mechanism must be carefully considered. The benzylidene unit is more diversified, but generally, the most common substituents are OH, OCH3, CH3, or halogen [31,65,66,68,69,70,77,78,80]. The salicylidene unit is common in tested metalloenzyme inhibitors. Furthermore, there are only two examples in which the hydroxy group is localized in the benzene ring of the acyl unit. An example is a 3,4-dihydroxybenzoic acid [80], a catechol, and a well-known laccase substrate [81,82,83]. The next examples are the derivatives of 3- or 4-monohydroxybenzoic acid, both described in our previous work. We investigated the role of the benzylidene unit of hydrazide-hydrazones in laccase inhibition [31]. We showed that the 4-hydroxybenzoyl fragment derived from 4-hydroxybenzoic acid (4-HBA) constitutes a specific decoy being the mediator of reactions catalyzed by laccase [84]. However, the units from salicylic aldehydes are also responsible for specific interaction with amino acids in the substrate cavity of the enzyme. These results showed that, among the slim-shaped molecules, the most active representatives act as competitive inhibitors with the KI in the range of 24.0–26.4 µM. Interestingly, the sterically hindered imine derivative with a 3,5-di-tert-butyl-salicylidene unit has the most promising KI = 17.9 µM and acts as an uncompetitive inhibitor. Generally, the values of the constant inhibition classify these compounds as effective agents that inhibit laccase.We aimed this enzyme as a target since it is secreted by pathogenic fungi, contributing to various plant diseases. We believe that laccase inhibition might prevent or weaken pathogen attacks by chemical protection. Continuing our previous study, in the present article, we have addressed the effect of changing the structure of the acyl unit in hydrazide-hydrazones while retaining their salicylidene character on laccase activity, see Figure 2.
Figure 2
The general structure of investigated hydrazide-hydrazones. The fragment derived from salicylic aldehydes is a salicylidene unit, and the acyl unit originated from acid hydrazides.
2. Results and Discussion
2.1. Syntheses and Characterizations
We synthesized and investigated the new phenolic hydrazide-hydrazones as a part of our ongoing project to discover aromatic compounds as antifungal and antiviral agents and key enzyme inhibitors of pathogenic microorganisms and viruses [31,85,86,87,88,89,90]. The target products were synthesized in a three-step procedure starting from carboxylic acid 1 via carboxylic acid methyl ester 2 [91] as the first intermediate product. The final hydrazide-hydrazone products 3–5 [31] were obtained by the direct condensation reaction of salicylic aldehydes 6–9 [92,93] and carboxylic acid hydrazides 10–19 [94], using the literature procedure [31], Scheme 1, Table 1. Products 3–5 were formed quantitatively and characterized. The high purity samples for the enzymatic study were prepared by direct crystallization from the reaction mixtures with a good to almost quantitative yield between 81 and 99%.
Scheme 1
Preparation of hydrazide-hydrazones 3a–b, 4a–o, and 5a–d scheme started from carboxylic acids 1 via carboxylic acid methyl esters 2 and carboxylic acid hydrazides 11–19.
Table 1
Characteristics of the hydrazide-hydrazones 3a–b, 4a–o, and 5a–d.
No.
Ar
R
Yield, (%)
Mp, (°C)
C=O a,b
N–H b,c
C=N b
CAr-O b
3a
3-tBu-2-HO-5-MeC6H2
Me
84
231–233
1654
1614
1565
1239
3b
3-tBu-2-HO-5-MeC6H2
4-HOC6H4CH2
85
242–244
1654
1612
1552
1261
4a
3-tBu-2-HO-5-MeC6H2
3-pyridyl
93
230–232
1638
1590
1552
1261
4b
3-tBu-2-HO-5-MeC6H2
C6H5
96
246–248
1635
1612
1561
1264
4c
3-tBu-2-HO-5-MeC6H2
3-MeOC6H4
93
238–240
1633
1584
1560
1241
4d
3-tBu-2-HO-5-MeC6H2
4-MeOC6H4
81
243–244
1636
1605
1537
1235
4e
3-tBu-2-HO-5-MeC6H2
2-HOC6H4
95
252–254
1637
1615
1560
1235
4f
3-tBu-2-HO-5-MeC6H2
3,5-(HO)2C6H3
83
246 d
1643
1583
1556
1265
4g
3,5-(tBu)2-2-HOC6H2
2-HOC6H4
97
233–235 e
1636
1584
1554
1247
4h
3,5-(tBu)2-2-HOC6H2
3-HOC6H4
98
273–274
1638
1611
1567
1251
4i
3,5-(tBu)2-2-HOC6H2
3,5-(HO)2C6H3
99
266 d
1599
1583
1549
1234
4j
3-tBu-2-HOC6H3
2-HOC6H4
98
218–220
1630
1610
1552
1231
4k
3-tBu-2-HOC6H3
3-HOC6H4
90
225–228
1648
1590
1567
1240
4l
3-tBu-2-HOC6H3
3,5-(HO)2C6H3
84
217–220
1591
1591
1557
1262
4m
2-HO-3-PhC6H3
2-HOC6H4
83
224–227
1601
1580
1559
1231
4n
2-HO-3-PhC6H3
3-HOC6H4
94
207–209
1651
1592
1527
1227
4o
2-HO-3-PhC6H3
3,5-(HO)2C6H3
91
241–243
1655
1592
1544
1254
5a
3-tBu-2-HO-5-MeC6H2
2-(1-hydroxynaphthyl)
92
215–217
1616
1581
1532
1250
5b
2-HO-3-PhC6H3
2-(1-hydroxynaphthyl)
82
226–228
1628
1600
1532
1249
5c
3,5-(tBu)2-2-HOC6H2
2-(1-hydroxynaphthyl)
95 f
121–123
1611
1584
1563
1250
5d
3-tBu-2-HOC6H3
2-(1-hydroxynaphthyl)
99
220–222
1623
1602
1565
1252
a Amide I bond vibrations; b in cm−1; c amide II bond vibrations; d Melts with decomposition; e Literature melting point: 218–222 °C [95], 230–232 °C [96]; f Crystallize with one molecule of CH3OH.
Among the spectroscopic methods used, the infrared spectra are the most diagnostic in the analysis of product formation due to the vanishing of the band with a very strong intensity usually observed around 1700 cm−1 that corresponded to stretching CH=O group vibration. Furthermore, the IR method is also helpful in monitoring the reaction progress and determining the product purity. Generally, the ATR-IR spectra of the functionalized salicylaldehyde derivatives 3–5 had an extensive absorption band between 3300–2500 cm−1. This absorption contained bands corresponding to stretching vibrations of O-H, N-H, CAr-H, and CH2 or CH3 of alkyls. The band from stretching vibration of O-H bond was not observed in most of the analyzed spectra as a characteristic one. It probably contributed to a mentioned broad absorption typical for crystalline compounds with strong H-bonding [97]. The vibrations of the hydrazide fragment are frequently described as amide vibrations, in which stretching vibration of C=O bond is named amide I and bending vibration of NH group—amide II. These are relatively strong and the medium absorptions found between 1700–1600 cm−1 and 1650–1550 cm−1, respectively. The other characteristic bands expected in the FT-IR spectrum correspond to stretching vibrations of C=N and C-O bonds. For all of the hydrazide-hydrazones 3–5, the wavenumbers corresponding to the following vibrations were assigned as following 3248–3164 cm−1 to stretching N-H bond, 1655–1591 cm−1 the amide I, 1615–1580 cm−1 amide II, 1567–1527 cm−1 stretching imine bond (C=N), and 1265–1227 cm−1 to stretching C-O phenolic bond. In the cases of methoxylated compounds 4c and 4d, the following stretching O-CH3 vibration was observed at 1044 cm−1 and 1029 cm−1, respectively.The structural similarities of the synthesized hydrazides 11–19 to the corresponding hydrazide-hydrazones 3–5 resulted in partial coverage of the wavelength values in their IR spectra. The broad absorption between 3300–2500 cm−1 contained stretching vibrations the bands of NH2 (3251–3182 cm−1), and N-H (3329–3283 cm−1), and C-H alkyl groups vibration in hydrazides 11, 14, and 15 (2963–2809 cm−1). Band of O-H stretching vibration was also not observed in this region. Absorptions with medium and strong intensities of amide I and amide II vibrations were attributed to bands between 1673–1605 cm−1 and 1604–1547 cm−1, respectively. The other characteristic bands corresponded to the stretching vibration of C-O in phenolic and O-CH3 in alkyl substituents found between 1269–1249 cm−1 and 1034–1030 cm−1, respectively. The stretching vibration of the N-N bond had a weak absorption around 1000–1200 cm−1. Although one nitrogen atom in the N-N group is acylated, it remains highly symmetrical and is not a diagnostic band in infrared spectra [98].All di-aryl hydrazide-hydrazones numbered 4 and 5 were isolated as pure geometric isomers E. These having acetyl units numbered 3a and 3b were isolated as E isomer predominantly with the ratio 79:21 and 87:13, respectively. We determined the ratio of isomers based on CH=N integration in 1H-NMR spectra.
2.2. Kinetic Studies
In our previous work, a 4-hydroxybenzoic acid (4-HBA) fragment of choice played a pivotal role in laccase inhibition as a decoy similar to its substrate. We showed that the salicylic aldehyde fragment with a bulky group localized neighbor to the hydroxy group, presented in Figure 3, contributes to a strong stabilizing effect with the hydrophobic area in a substrate-binding pocket [31]. In the present work, we extended the structure–activity relationship (SAR) after the change of acyl fragment (Figure 2) introduced from the carboxylic acid. We preserved the salicylidene unit in hydrazide-hydrazone molecules introduced directly from salicylic aldehyde substrates 6–9.
Figure 3
The structure of the aldehydes 6–9 used in the synthesis of corresponding target salicylic hydrazide-hydrazones 3–5 and 20–23 control compounds (enumerated in parentheses).
We synthesized a set of twenty-one hydrazide-hydrazones from four salicylic aldehydes of choice 6–9 (Figure 3) and ten differently substituted acid hydrazides 10–19.Considering the possible interactions of the salicylic acid fragment with a substrate-binding site in the enzyme, we used two alkyl hydrazides 10–11 and eight different aromatic acid hydrazides 12–19. The alkyl hydrazides were acetic acid hydrazide 10 and 2-(4-hydroxyphenyl)acetic acid hydrazide 11. The aromatic unit contained 3-pyridyl 12, benzoic 13, and the potential substrates for laccase such as OH and OMe differently substituted arenes 14–19. Among them, 3-, 4-methoxy-, 2-, 3-hydroxy-, and 3,5-dihydroxybenzoic, 14–15, 16–17, and 18, respectively, and also 2-(1-hydroxy)naphthoic acid hydrazide (19) were used.Based on the character of the acyl fragment, we formally divided the tested hydrazide-hydrazones numbered 3–5 into three groups. The first group contained two alkyl representatives, methyl and 4-hydroxybenzyl in 3a and 3b, respectively. The second group included a strong electron-deficient 3-pyridyl or phenyl rings in 4a and 4b, respectively, and an electron-rich phenyl ring having a strong electron-donating methoxy 4c, 4d, hydroxy 4e, 4g, 4h, 4j, 4k, 4m, 4n, and dihydroxy 4f, 4i, 4l, 4o substituents. The structures of the compounds 5a–d in the third group contained a bigger 1-hydroxy-2-naphthoyl ring that provides their slim-like character (Table 2). To compare the inhibition potency of new compounds, we chose NaN3 as a classic standard reference. Additionally, we used hydrazide-hydrazone derivatives of 4-HBA numbered 20–22 and 4-methoxybenoic acid derivative 23 negative standards described in our previous work (Table 2) [31].
Table 2
Structures and inhibition constant (KI, µM) values of the hydrazide-hydrazones 3a–b, 4a–o, 5a–d determined for laccase (T. versicolor). Crucial KI values were bolded. The reference compounds are 20–23 and NaN3 [31].
No.
Ar
R
KI, µM
R2
Inhibition Type
3a
3-tBu-2-HO-5-MeC6H2
Me
– a
–
– b
3b
3-tBu-2-HO-5-MeC6H2
4-HOC6H4CH2
49.2
0.960
uncompetitive
4a
3-tBu-2-HO-5-MeC6H2
3-pyridyl
– c
–
– b
4b
3-tBu-2-HO-5-MeC6H2
C6H5
82.0
0.996
competitive
4c
3-tBu-2-HO-5-MeC6H2
3-MeOC6H4
17.4
0.974
non-competitive
4d
3-tBu-2-HO-5-MeC6H2
4-MeOC6H4
25.8
0.984
competitive
4e
3-tBu-2-HO-5-MeC6H2
2-HOC6H4
150.0
0.958
uncompetitive
4f
3-tBu-2-HO-5-MeC6H2
3,5-(HO)2C6H3
32.3
0.982
competitive
4g
3,5-(tBu)2-2-HOC6H2
2-HOC6H4
52.6
0.998
non-competitive
4h
3,5-(tBu)2-2-HOC6H2
3-HOC6H4
18.9
0.996
competitive
4i
3,5-(tBu)2-2-HOC6H2
3,5-(HO)2C6H3
55.6
0.961
competitive
4j
3-tBu-2-HOC6H3
2-HOC6H4
65.6
0.965
uncompetitive
4k
3-tBu-2-HOC6H3
3-HOC6H4
35.8
0.994
competitive
4l
3-tBu-2-HOC6H3
3,5-(HO)2C6H3
38.0
0.923
competitive
4m
2-HO-3-PhC6H3
2-HOC6H4
26.4
0.982
competitive
57.1
0.959
uncompetitive
4n
2-HO-3-PhC6H3
3-HOC6H4
233
0.976
competitive
139
0.964
non-competitive
4o
2-HO-3-PhC6H3
3,5-(HO)2C6H3
69.9
0.977
non-competitive
5a
3-tBu-2-HO-5-MeC6H2
2-(1-hydroxynaphthyl)
19.0
0.993
competitive
8.0
0.982
non-competitive
5b
2-HO-3-PhC6H3
2-(1-hydroxynaphthyl)
25.8
0.950
competitive
24.3
0.999
non-competitive
5c
3,5-(tBu)2-2-HOC6H2
2-(1-hydroxynaphthyl)
16.2
0.998
non-competitive
5d
3-tBu-2-HOC6H3
2-(1-hydroxynaphthyl)
75.2
0.971
competitive
55.6
0.999
non-competitive
20 d
3-tBu-2-HO-5-MeC6H2
4-HOC6H4
26.4 [31]
–
competitive
21 d
3,5-(tBu)2-2-HOC6H2
4-HOC6H4
17.9 [31]
–
uncompetitive
22 d
3-tBu-2-HO-5-MeC6H2
3-HOC6H4
32.0 [31]
–
non-competitive
23 d
2-HO-3-PhC6H3
4-MeOC6H4
≥1000 [31]
–
– b
–
NaN3d
2.7 [31]
non-competitive
a Not active up to 1000 µM of concentration tested, b not determined, c insoluble in medium, KI—an inhibition constant, determined for a related type of inhibition according to reference [99], d controls [31].
The kinetic studies showed that the nineteen hydrazide-hydrazones exhibited an inhibition potency in the micromolar range of KI between 8.0–233 µM and different modes of interaction with the enzyme molecules. Nine compounds 3a–b, 4a–f, and 5a (Table 2) contain the 3-tert-butyl-5-methyl-salicylidene leading motif introduced from aldehyde 8 (Figure 2). We used previously reported hydrazide-hydrazone 20 derived from leading aldehyde 8 and 4-hydroxybenzoic acid hydrazide to compare the kinetic results. It acted as the competitive inhibitor with a constant KI = 26.4 µM. Among the hydrazide-hydrazones, the acetyl derivative 3a, and nicotinoyl derivative 4a, were not active at the desirable micromolar range. The benzoyl derivative 4b had a moderate activity with KI = 82.0 µM. Comparing it with 3b derivative with para hydroxylated benzene ring with methylene linker, almost a two-fold improvement of inhibition activity was observed (KI = 49.1 µM). On the other hand, the alteration from standard 20 having the 4-hydroxyphenyl framework to above compound 3b resulted in an almost two-fold drop in the activity, which confirmed our predictions that the hydroxylated aromatic fragment serves as a decoy and is required on the benzoyl fragment. Despite the 3b seeming structurally like laccase substrate, the distance of the para-hydroxylated phenyl ring of the molecule core resulted in its higher affinity to the enzyme-substrate complex (Figure 4). Similar to 3b, the more hindered salicylic acid derivatives, the 4e, 4g, 4j, and 4m, also did not act as competitive inhibitors. Among the discussed compounds, 4e molecule acted as an uncompetitive laccase inhibitor, which corresponded to dropped inhibition potency approximately six-fold compared to the control 20, both derivatives of our leading aldehyde. As it resulted from kinetic measurements, removing the smallest alkyl group in the 5-position of the aldehyde fragment increases the inhibition potency from 150 µM to 65.6 µM for 4e and 4j compounds, respectively, simultaneously preserving the uncompetitive type of action.
Figure 4
The Lineweaver–Burk plots (1/V [min·µM−1] = f(1/CS) [µM−1]) for 3b performed for the inhibitor concentration up to 30 µM. The additional graphs show the linear dependence of 1/KM,app = f(I) [µM] related to the uncompetitive mechanism.
On the other hand, replacing the 3-tert-butyl group in 4j on a phenyl ring in 4m resulted in a change of inhibition mechanism to a mixed type. Such structural modification in 4m improved the value of constant inhibition of competitive component to 26.4 µM, at the same value as for the control 20. Comparing the compounds having bulky 3,5-di-tert-butyl-2-hydroxy-benzylidene unit showed that a change of 4-hydroxybenzoyl group in control 21 to 2-hydroxybenzoyl in 4g resulted in a three-fold decrease in inhibition activity. Interestingly, the only exception was the derivative 4m of 2-hydroxybenzoyl and 3-phenyl-salicylidene units, for which the value of the competitive component KI = 26.4 µM remained the same as for control 20.Well-known facts supported the choice of the salicylic acid hydrazide as the substrate for synthesizing potent hydrazide-hydrazone laccase inhibitors. Salicylic acid (SA) is a natural signaling molecule that activates plant defense responses to a pathogen attack [100,101]. The SA functional analogs are applied in the crop protection sector [102], and the salicylic acid [103] and a sulphonyl salicylic acid [104] are not laccase substrates. Moreover, the SA is not a promotor of laccase production in white-rot fungi culture [105].The remaining hydrazide-hydrazones of the second group are also benzoyl mono- and di-hydroxylated in 3-position or 3,5-positions derivatives 4h, 4k, 4n or 4f, 4i, 4l, 4o, respectively. Five of seven compounds were pure competitive inhibitors with good inhibition potency between 18.9–35.8 µM and 32.3–55.6 µM for mono- and di-substituted, respectively. Comparison of appropriate pairs of 3-hydroxy and 3,5-dihydroxy (α-resorcinic acid unit) derivatives 22 and 4f, 4h and 4i, and 4k and 4l showed their inhibition potency and the beneficial effect of benzoyl fragments on laccase inhibition. Compounds 4k and 4l and 22 and 4f had comparable inhibition effects, and these pairs derived from aldehyde 7 and 8 differ the CH3 group in 5-position, respectively, see Figure 3. We observed the most significant difference between the last pair of inhibitors 4h and 4i with a common backbone of di-tert-butyl-salicylic aldehyde (9). These compounds acted as competitive inhibitors. For example, see Figure 5 for mono-hydroxylated on acyl unit derivative 4h. This molecule was three-fold more effective than its disubstituted counterpart 4i, because the crowded phenolic rings seemed too large to effectively interact with the substrate cavity.
Figure 5
The Lineweaver–Burk plots (1/V [min µM−1] = f(1/CS) [µM−1]) for 4h performed for the inhibitor concentration up to 16 µM. The additional graphs show the linear dependence of KM,app/KM = f(I) concerning the competitive mechanism.
In general, a hydroxy group in meta-position may offer preferential interactions with the substrate cavity in the enzyme. Changes in the positioning of the single 3-OH group may occur by flipping around the axis C1–C4 of the benzoyl ring. We expected a similar but strengthened interaction for disubstituted α-resorcinic acid hydrazide. In this case, interaction in symmetrically localized hydroxy groups was probably slightly weaker or unfavorable to the fit of the molecules in the active site.Two remaining compounds, 4o and 4n, have a common 3-phenyl salicylaldehyde fragment. These present the lowest inhibition potency between 69.9 and 233 µM with the mixed or non-competitive type of inhibition. On the other hand, these derivatives showed improved activities compared to an inactive control 23 with the aldehyde 6 core but methoxy substituent in acyl fragment. It seems that the bulky electron-rich phenolic substituent represents adverse properties to bind to the substrate-binding cavity. Interestingly, the hydrazide-hydrazone 4c and 4d, which are methoxylated in meta- and para position of benzoyl unit and containing the common aldehyde 8 core, are the most active in this group. The constants inhibition of 4c and 4d are 17.4 µM and 25.8 µM, respectively. The slim 4d hydrazide-hydrazone has a high affinity to substrate-binding pocket. A mobile methoxy group localized in meta position in 4c prevented the interaction with the active site of the enzyme (Figure 6). It was in agreement with the reactivity of para-methoxylated arenes such as para-anisic alcohol in the presence of laccase [106]. Further discussion of OCH3 needs developing experimental and theoretical studies, which might also open a new issue about laccase inhibitors.
Figure 6
The Lineweaver–Burk plots (1/V [min µM−1] = f(1/CS) [µM−1]) for 4c the inhibitor concentration up to 10 µM. The additional graphs show the linear dependence of Vmax/Vmax,app = f(I) [µM] for non-competitive mechanism.
Finally, the third group numbered 5a–d contains a 2-hydroxynaphtalene hydrazide leading fragment (Table 2). Such substituent would require a large area in the enzyme-substrate cavity for hydrophobic interaction of such a bulk polycyclic arene and provide possible hydrogen bonding with hydrophilic amino acids. As it resulted from form experiments, three out of four compounds acted as mixed inhibitors. For 5a, 5b, and 5d, the non-competitive component KI had a consistently lower value than the competitive counterpart. Together with the 5b derivative, they acted as non-competitive inhibitors preferentially. Furthermore, the magnitude of inhibition constants indicates that the effect of mono-substitution of aldehyde fragment in 3-position (5b and 5d) is insufficient to obtain higher inhibition potency than 24.3 µM (Table 2). The additional alkyl substituent in 5-position improved inhibition potency. The small CH3 group in 5a preserved the mixed type of inhibition (Figure 7) with a very good value of non-competitive component KI = 8.0 µM and a good value of competitive constant equal to 19.0 µM. The additional bulk tert-butyl group in position 5 in compound 5c changed the mechanism to pure non-competitive with relatively good KI = 16.2 µM. The found hydrazide-hydrazones with the highest activity towards laccase will be the subject of further research on SAR and future application to protect cultivating plans against phytopathogenic fungi [107].
Figure 7
The Lineweaver–Burk plots (1/V [min·µM−1] = f(1/CS) [µM−1]) for 5a performed for the inhibitor concentration up to 10 µM. The additional graphs show the linear dependence of KM,app ·Vmax/(KM ·Vmax,app) = f(I) concerning the competitive component in a mixed type mechanism.
2.3. Docking Studies
The compounds used in the enzymatic assay were docked in the active center of the laccase (PDB 1GYC). Used procedures were the same as in the previous publication on our laccase research [25]. This time, however, we decided to put forward a hypothesis and check whether the changes in the inhibition type may depend only on the construction of the active center, previously called the substrate cavity. Especially, that several of the inhibitors we have tested showed a mixed mechanism of inhibition. The amino acids Asp206, Asn208, Asn264, and His258 played a key role in interacting with active compounds. They carry an electron from the substrate to the oxygen cavity. However, the other numerous amino acids building the active site (Figure 8A) have a significant influence on the location of the substrate in the active site. The laccase active center can be divided into two hydrophobic parts and one creating numerous hydrogen bonds. Rather, the compounds we investigated fill the volume of one of the hydrophobic cavities and the area of hydrophilic interactions. The position of selected inhibitors is shown in Figure 8B: compounds with a competitive mechanism are shown as a green mesh, while the others are shown as an orange mesh. The inhibitors with the lowest values of the inhibition constants are shifted deeper into the active center.
Figure 8
The active center of the laccase (PDB: 1GYC) with selected amino acids building the cavity (A) and the position of investigated inhibitors shown as grids (B). The sidechains of amino acids are shown as blue sticks and the protein is shown as a light blue tube and its surface is colored gray. The Cu ion is shown as a blue sphere. The mesh of the competitive inhibitors is green, uncompetitive, non-competitive, and mixed is orange.
The compounds used in the enzyme assay were docked to the active site of laccase (PDB 1GYC). The procedures used were the same as in the previous publication on our research on laccase [31]. This time, however, we decided to make a hypothesis and check whether the changes in the type of braking may depend only on the construction of the active center, previously called the ground cavity. Especially since several of the inhibitors we have tested exhibited a mixed inhibition mechanism. The amino acids Asp206, Asn208, Asn264, and His258 played a crucial role in interacting with active compounds. They transfer an electron from the substrate to the oxygen cavity. However, numerous other amino acids building the active site (Figure 8A) have a significant influence on the location of the substrate in the active site. The active site of laccase can be divided into two hydrophobic parts and one forming numerous hydrogen bonds. Rather, the compounds we investigated fill the volume of one of the hydrophobic cavities and the area of hydrophilic interactions. The position of selected inhibitors is shown in Figure 8B: compounds with a competition mechanism are shown as a green grid, while others are shown as an orange grid. Inhibitors with the lowest values of inhibition constants are shifted deeper into the active center.The pairs of the inhibitors like 4j and 4k, and 4g and 4h have a common backbone. The slide difference between them is the position of the hydroxyl group from the hydrazide fragment. That difference plays a key role in the type of binding and inhibition of the compounds. Derivative of salicylic acid 4j having one tert-butyl group (Figure 9A) is placed like inhibitors from our earlier studies [31]. The hydrophobic ring with the tert-butyl substituent is directed toward the Phe265 with medium-range aromatic interactions (4.29 Å). Asp206 is involved in a hydrogen bond with its hydroxyl group (1.86 Å) and with the backbone nitrogen atom (2.22 Å). The other hydrogen positioning of the inhibitor is seen by the interactions with Asn208 (2.05 Å) and Asn264 (1.85 Å). Those close distance non-bond bindings are strengthened by Pro394 (3.60 Å, 5.17 Å) and Pro396 (4.93 Å). The derivative 4k (Figure 9B) with a hydroxy group in meta position has a different inhibition mechanism, and it is slightly moved of the cavity depth. In this case, the hydrazide hydroxyl group interacts with Asn206 (2.20 Å) and Asn264 (2.04 Å). The position of the ring is stabilized by extra hydrophobic interactions with Leu164 (5.20 Å). The carbonyl oxygen atom and the hydrazide nitrogen create a hydrogen bond triangle with His458, and the position of the ring is stabilized by Phe162 (4.22 Å) and Pro391 (5.06 Å).
Figure 9
The active center of the laccase (PDB: 1GYC) with the interaction between selected amino acid and inhibitors: 4j (A), 4k (B), 4g (C), 4h (D). The amino acids are shown as blue sticks and the protein is shown as a light blue tube, and its surface is colored gray. The Cu ion is shown as a blue sphere. The interactions are black dashed lines.
The larger molecules having two tert-butyl substituents in the salicylidene framework, such as 4g (Figure 9C) and 4h (Figure 9D) have less freedom in the binding. They are placed deep in the pocket engaging the same set of amino acids. The different position of a hydroxyl localized on benzoyl unit in ortho vs meta in 4g and 4h, respectively, causes the flip of the phenyl ring. Consequently, the extra hydrogen bond between 4h and the carbonyl oxygen of the Asp206 (1.67 Å) is created. The hydrogen interaction of the hydroxyl group with Asp206 is of the most significant importance in the inhibition mechanism by blocking the flow of electrons. In other instances, the inhibition is by blocking the substrate’s access site for the amino acid. The presence of a hydrogen bond between the hydroxy group and Asn208 can also change the type of inhibition from uncompetitive to non-competitive (4j vs 4g). Compounds with methoxy substituents 4c and 4d are also pairs of inhibitors with different inhibition types. The meta position of the methoxy group 4c creates an unpreferred position in the cavity space. The freedom of the rotation is not appreciated in the deep binding of the inhibitor. That creates a phenomenon, the 4c is turned opposite to the projected mechanism. In contrast, the 4d binds properly to the inhibition types and interacts with the Asp206.The thesis is also confirmed by analyzing the interaction of more hydrophobic compounds having a naphthoic ring in their structure with amino acids in the active center. Compound 5a (Figure 10A) had the lowest value of the inhibition constant, but it has a mixed mode of inhibition. The low value of the non-competitive inhibition constant for the binding method of this inhibitor is related to the fact that it is located deep but also in its upper part in the active center, blocking access to His458. Additionally, 5a forms a strong hydrogen bond with Asp206 (1.79 Å). The lack of interaction with the amino acids that make up the cavity’s lower area is one of the reasons for the dual binding mechanism. However, 5c (Figure 10B) is bound to amino acids of the lower part of the active center but does not interact with the Asp206, and it has the non-competitive type of inhibition.
Figure 10
The active center of the laccase (PDB: 1GYC) with the interaction between selected amino acid and inhibitors: 5a (A), 5c (B). The amino acids are shown as blue sticks, and the protein is shown as a light blue tube, and its surface is colored gray. The Fe ion is shown as a blue sphere. The interactions are black dashed lines.
This leads to the conclusion, the compound to inhibit laccase competitively must interact with amino acids from the depths and bottom of the active center, such as Asp206, Asn264, Leu 164, or Phe265. Another criterion required for this type of inhibition is the formation of a strong hydrogen bond between Asp206 and the inhibitor using heteroatoms that do not build the backbone of the inhibitor, blocking the flow of electrons.
3. Materials and Methods
All commercially available chemicals were purchased as pure for synthesis or analytical grade reagents (Sigma-Aldrich Poznan, Poland, ARMAR, Wroclaw, Poland) and solvents were used mostly without further purification. In particular, nicotinic acid methyl ester (2a), 2-(4-hydroxyphenyl)-acetic acid methyl ester (2b), 3-tert-butyl-salicylic aldehyde (7), 3,5-di-tert-butyl-salicylic aldehyde (9), acetic acid hydrazide (10), and hydrazine monohydrate purchased in Sigma-Aldrich, and syringaldazine (SNG, 4-hydroxy-3,5-dimethoxybenzaldehyde azine), dimethylsulfoxide (DMSO), citric acid monohydrate, and sodium phosphate dibasic dodecahydrate, purchased in POCh (Poland) were used without further purification. Laccase from Trametes versicolor was purchased in lyophilized powder from Sigma-Aldrich (Poznan, Poland).Methanol (CH3OH) was distilled prior to reactions from Mg element shavings in the presence of I2. The following substrates such as 3-phenylsalicylicaldehyde (6), 3-tert-butyl-5-methylsalicylic aldehyde (8), 4-methoxybenzoic acid hydrazide (15), 3-hydroxybenzoic acid hydrazide (18), and reference hydrazide-hydrazones 4-hydroxy-N’-[(E)-3-tert-butyl-2-hydroxy-5-methylbenzylidene]benzohydrazide (20), 4-hydroxy-N’-[(E)-(3,5-di-tert-butyl-2-hydroxyphenyl)methylidene]benzohydrazide (21), 3-hydroxy-N’-[(E)-(3-tert-butyl-2-hydroxy-5-methylphenyl)methylidene]benzohydrazide (22), and 4-methoxy-N’-[(E)-2-hydroxy-3-phenylbenzylidene]benzohydrazide (23) were synthesized and characterized in our previous work [31]. Analytical TLC was performed on PET foils precoated with silica gel (silica gel, 60 F254, Merck, Darmstadt, Germany), and were made visual under UV light (λmax = 254 nm), or by staining with iodine vapor. Melting points were determined on an Electrothermal IA 91100 (ST. Louis, MO, USA) digital melting-point apparatus using the standard open capillary method. FT-IR spectra (4000–400 cm−1) were recorded as KBr plates on a Perkin–Elmer 2000 FT-IR (Manchester, UK) or Bruker VERTEX 70V spectrometer using a diamond ATR accessory and Nicolet iS50 spectrometer (Thermo Fisher SCIENTIFIC, Waltham, MA, USA) with a resolution of 4 cm−1 at wavenumbers in the range of 500–4000 cm−1. Absorption maxima were reported in wavenumbers (cm−1). 1H-NMR and 13C-NMR spectra were recorded on a Bruker DRX 300 Spectrometer (300.13 for 1H and 75.475 for 13C) on Jeol 400yh (Tokio, Japan) (399.78 for 1H and 100.52 for 13C) or a Bruker Advance 600 Spectrometer (Poznan, Poland) (600.58 for 1H and 151.03 for 13C) at 295 K. Chemical shifts (δ) are given in parts per million (ppm) downfield relative to TMS, and coupling constants (J) are in Hz. Residual solvent central signals were recorded as follows: DMSO-d6, δH = 2.500, δC = 39.43; CHOH-d4, δH = 3.310, δC = 49.05; CDCl3, δH = 7.263, δC = 77.00. When measured, DEPT and ATP experiments signals are referred to as (+) or (–). High-resolution mass spectra (HRMS) were recorded on a Waters LCD Premier XE instrument (Manchester, UK), and only the [M + H]+ or [M + Na]+ molecular species are reported. Purity and homogeneity of known bezohydrazide 11–19, methyl ester 2a and 2b, and aldehydes 6–9 were confirmed by measuring their melting points, FT-IR, 1H-NMR, and 13C-NMR spectra and/or HRMS and compared them with literature data. All new phenolic aroylhydrazide-hydrazones 3–5 were fully characterized. The position of hydrogen and carbon atoms in the NMR data was determined by supporting the standard dept-135 and ATP experiments and by the 2D-NMR (HMQC, HSQC, HMBC, and NOESY) experiments map analysis if measured. The spectra images of FT-IR and NMR for the following compounds are placed in Supplementary Materials as follows: Figures S1 and S2 Spectroscopic characterization of 1h, Figure S3–S18 Spectroscopic characterization of 2a, 2c, 2e, 2g, 2h, 2i, Figure S19–S289 Spectroscopic characterization of hydrazide-hydrazones 3–5, Figure S290–S293 Spectroscopic characterization of salicylic aldehydes 6 and 8, Figure S294–S348 Spectroscopic characterization of acid hydrazides 11–19.
Reaction conditions and kinetic assays were performed as reported previously [25]. Briefly, the kinetic measurements were conducted in pH 5.3 at 25 ℃. A reaction was carried out in a plastique cuvette with a total capacity of 2.0 mL. It contained 1.5 mL of a diluted in McIlvain buffer enzyme (10–50 nM), 0.1 mL of inhibitor (1 × 103 µM), and 0.1 mL of syringaldazine (0.5–15 µM). Hydrazide-hydrazones, sodium azide, and syringaldazine were dissolved in methanol as co-solvent before use. Before reaction, the enzyme was preincubated with an inhibitor for 30 min. The progress of the reaction was measured at 525 nm (Shimadzu, UV-VIS 1800, Tokyo, Japan) using UVProbe 2.70 software. Each reaction was performed at least in triplicate. The velocity of the syringaldazine conversion was expressed as a change in product concentration in time (µM/min) and calculated from the region of a first-order kinetic using an extinction coefficient ε0 = 65,000 cm−1 [110]. The kinetic parameters for all tested compounds were calculated by using Lineweaver–Burk transformation and the linear least square method in Matlab (The Mathworks, R2019R Version 9.6, academic license) using steady-state kinetics. The goodness of fit was assessed using the coefficient of determination (R2), the sum of square errors (SSE), and root mean squared error (RMSE). The following equations were applied for the determination of the competitive Equation (1), non-competitive Equation (2), uncompetitive Equation (3), and mixed Equation (4) types of inhibition [99]. Mixed type of inhibition Equation (4) was determined based the Segel’s mathematical model where KI component corresponds to the competitive component, whereas α·KI is a non-competitive or uncompetitive component for α < 1 or α > 1, respectively. The resulted from inhibition changes in Vmax [µM·min−1] and KM [µM] parameters were expressed as their apparent counterparts Vmax,app [µM·min−1] and KM,app [µM]. The constant inhibition values (KI) were determined by replotting fixed apparent values versus inhibitor concentrations into a linear function (Figure 2 and Figure 3).
1/V = (
where KM,app is defined as KM·(1 + I/KI)
1/V = (
where Vmax,app is defined as (1 + I/KI)/Vmax
1/V = (
where Vmax,app is defined as (1 + I/KI)/Vmax or 1/KM,app = (1/KM)·(1 + I/KI)
1/V = (
where KM,app is defined as KM·(1 + I/KI), and Vmax,app defined as (1 + I/α·KI)/Vmax, where KM—a Michaelis–Menten constant [µM], KM,app—an apparent Michaelis–Menten constant [µM], Vmax—a maximal enzyme velocity [µM·min−1], Vmax,app—an apparent maximal enzyme velocity [µM·min−1], Cs—a substrate (syringaldazine) concentration, I—an inhibitor concentration [µM], KI—an inhibition constant [µM], α·KI is a non-competitive or uncompetitive component for α < 1 or α > 1 in the mixed type of inhibition, respectively.
4. Conclusions
In this work, we aimed to investigate the inhibition activity of hydrazide-hydrazones towards laccase from Trametes versicolor. The hydrazide-hydrazones were synthesized using four salicylic aldehydes of choice and eleven hydrazides to obtain 21 derivatives, of which 20 have not been described in the literature so far. The most active compounds have the constant inhibition in the range of 8 and 25.8 µM and present diversified types of inhibition, but none of them interact with the enzyme-substrate complex. Kinetic results revealed that the presence of an arene electron-rich benzoyl fragment containing hydroxy and methoxy group in 3 and 4 positions of the benzene ring is necessary to inhibit laccase activity effectively. Performed for selected derivatives, the structure–activity relationship analysis showed that the slice differences in the built of the inhibitors might reflect the inhibition type. We evaluated the contribution of the selected amino acids from the substrate center with the possibility of changing the type of inhibition. The deep and substrate-like binding is preferred to interact competitively, but the mixed systems with uncommon interactions resulted in lower KI values. The found hydrazide-hydrazones with the highest activity towards laccase will be the subject of further research on SAR and future application to protect cultivating plans against phytopathogenic fungi [107].
Authors: Jehan Y Al-Humaidi; Mohamed G Badrey; Ashraf A Aly; AbdElAziz A Nayl; Mohie E M Zayed; Ohoud A Jefri; Sobhi M Gomha Journal: Polymers (Basel) Date: 2022-08-03 Impact factor: 4.967