Literature DB >> 32109054

Exploring the Post-translational Enzymology of PaaA by mRNA Display.

Steven R Fleming1, Paul M Himes1, Swapnil V Ghodge1,2, Yuki Goto3,4, Hiroaki Suga3,5, Albert A Bowers1.   

Abstract

PaaA is a RiPP enzyme that catalyzes the transformation of two glutamic acid residues within a substrate peptide into the bicyclic core of Pantocin A. Here, for the first time, we use mRNA display techniques to understand RiPP enzyme-substrate interactions to illuminate PaaA substrate recognition. Additionally, our data revealed insights into the enzymatic timing of glutamic acid modification. The technique developed is quite sensitive and a significant advancement over current RiPP studies and opens the door to enzyme modified mRNA display libraries for natural product-like inhibitor pans.

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Year:  2020        PMID: 32109054      PMCID: PMC7330867          DOI: 10.1021/jacs.0c01576

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  36 in total

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Journal:  J Am Chem Soc       Date:  2017-08-21       Impact factor: 15.419

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5.  Silent Encoding of Chemical Post-Translational Modifications in Phage-Displayed Libraries.

Authors:  Katrina F Tjhung; Pavel I Kitov; Simon Ng; Elena N Kitova; Lu Deng; John S Klassen; Ratmir Derda
Journal:  J Am Chem Soc       Date:  2015-12-28       Impact factor: 15.419

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Review 8.  Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature.

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Journal:  Nat Prod Rep       Date:  2013-01       Impact factor: 13.423

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Journal:  Nat Chem Biol       Date:  2015-07-13       Impact factor: 15.040

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  13 in total

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2.  Accurate Models of Substrate Preferences of Post-Translational Modification Enzymes from a Combination of mRNA Display and Deep Learning.

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Review 3.  Cell-Free Exploration of the Natural Product Chemical Space.

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Review 4.  Directing evolution of novel ligands by mRNA display.

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Review 5.  Engineering of new-to-nature ribosomally synthesized and post-translationally modified peptide natural products.

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6.  Expanding the Chemical Diversity of Genetically Encoded Libraries.

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Review 7.  New developments in RiPP discovery, enzymology and engineering.

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8.  A Macrocyclic Peptide Library with a Structurally Constrained Cyclopropane-containing Building Block Leads to Thiol-independent Inhibitors of Phosphoglycerate Mutase.

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Review 9.  Biocatalytic synthesis of peptidic natural products and related analogues.

Authors:  Dake Liu; Garret M Rubin; Dipesh Dhakal; Manyun Chen; Yousong Ding
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10.  C-Terminal Tag Location Hampers in Vitro Profiling of OGT Peptide Substrates by mRNA Display.

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