Literature DB >> 32783358

Cell-Free Exploration of the Natural Product Chemical Space.

Jonathan W Bogart1,2,3, Maria D Cabezas1,2,3, Bastian Vögeli1,2,3, Derek A Wong1,2,3, Ashty S Karim1,2,3, Michael C Jewett1,2,3,4,5.   

Abstract

Natural products and secondary metabolites comprise an indispensable resource from living organisms that have transformed areas of medicine, agriculture, and biotechnology. Recent advances in high-throughput DNA sequencing and computational analysis suggest that the vast majority of natural products remain undiscovered. To accelerate the natural product discovery pipeline, cell-free metabolic engineering approaches used to develop robust catalytic networks are being repurposed to access new chemical scaffolds, and new enzymes capable of performing diverse chemistries. Such enzymes could serve as flexible biocatalytic tools to further expand the unique chemical space of natural products and secondary metabolites, and provide a more sustainable route to manufacture these molecules. Herein, we highlight select examples of natural product biosynthesis using cell-free systems and propose how cell-free technologies could facilitate our ability to access and modify these structures to transform synthetic and chemical biology.
© 2020 Wiley-VCH GmbH.

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Year:  2020        PMID: 32783358      PMCID: PMC8215586          DOI: 10.1002/cbic.202000452

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  53 in total

1.  Discovery of parallel pathways of kanamycin biosynthesis allows antibiotic manipulation.

Authors:  Je Won Park; Sung Ryeol Park; Keshav Kumar Nepal; Ah Reum Han; Yeon Hee Ban; Young Ji Yoo; Eun Ji Kim; Eui Min Kim; Dooil Kim; Jae Kyung Sohng; Yeo Joon Yoon
Journal:  Nat Chem Biol       Date:  2011-10-09       Impact factor: 15.040

2.  Computational approaches to natural product discovery.

Authors:  Marnix H Medema; Michael A Fischbach
Journal:  Nat Chem Biol       Date:  2015-09       Impact factor: 15.040

3.  Flexizyme-Enabled Benchtop Biosynthesis of Thiopeptides.

Authors:  Steven R Fleming; Tessa E Bartges; Alexander A Vinogradov; Christine L Kirkpatrick; Yuki Goto; Hiroaki Suga; Leslie M Hicks; Albert A Bowers
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

4.  A cell-free framework for rapid biosynthetic pathway prototyping and enzyme discovery.

Authors:  Ashty S Karim; Michael C Jewett
Journal:  Metab Eng       Date:  2016-03-17       Impact factor: 9.783

5.  Total in vitro biosynthesis of the nonribosomal macrolactone peptide valinomycin.

Authors:  Lei Zhuang; Shuhui Huang; Wan-Qiu Liu; Ashty S Karim; Michael C Jewett; Jian Li
Journal:  Metab Eng       Date:  2020-03-26       Impact factor: 9.783

6.  Development of a clostridia-based cell-free system for prototyping genetic parts and metabolic pathways.

Authors:  Antje Krüger; Alexander P Mueller; Grant A Rybnicky; Nancy L Engle; Zamin K Yang; Timothy J Tschaplinski; Sean D Simpson; Michael Köpke; Michael C Jewett
Journal:  Metab Eng       Date:  2020-06-12       Impact factor: 9.783

7.  The hidden enzymology of bacterial natural product biosynthesis.

Authors:  Thomas A Scott; Jörn Piel
Journal:  Nat Rev Chem       Date:  2019-06-12       Impact factor: 34.035

Review 8.  Principle and design of pseudo-natural products.

Authors:  George Karageorgis; Daniel J Foley; Luca Laraia; Herbert Waldmann
Journal:  Nat Chem       Date:  2020-02-03       Impact factor: 24.427

9.  Cell-free biosynthesis of limonene using enzyme-enriched Escherichia coli lysates.

Authors:  Quentin M Dudley; Connor J Nash; Michael C Jewett
Journal:  Synth Biol (Oxf)       Date:  2019-01-14

10.  Structural analysis of leader peptide binding enables leader-free cyanobactin processing.

Authors:  Jesko Koehnke; Greg Mann; Andrew F Bent; Hannes Ludewig; Sally Shirran; Catherine Botting; Tomas Lebl; Wael Houssen; Marcel Jaspars; James H Naismith
Journal:  Nat Chem Biol       Date:  2015-06-22       Impact factor: 15.040

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  7 in total

1.  An efficient cell-free protein synthesis platform for producing proteins with pyrrolysine-based noncanonical amino acids.

Authors:  Arnaz Ranji Charna; Benjamin J Des Soye; Ioanni Ntai; Neil L Kelleher; Michael C Jewett
Journal:  Biotechnol J       Date:  2022-06-09       Impact factor: 5.726

2.  Improving cell-free glycoprotein synthesis by characterizing and enriching native membrane vesicles.

Authors:  Jasmine M Hershewe; Katherine F Warfel; Shaelyn M Iyer; Justin A Peruzzi; Claretta J Sullivan; Eric W Roth; Matthew P DeLisa; Neha P Kamat; Michael C Jewett
Journal:  Nat Commun       Date:  2021-04-22       Impact factor: 14.919

Review 3.  A roadmap for metagenomic enzyme discovery.

Authors:  Serina L Robinson; Jörn Piel; Shinichi Sunagawa
Journal:  Nat Prod Rep       Date:  2021-11-17       Impact factor: 13.423

4.  Plant-Derived Cell-Free Biofactories for the Production of Secondary Metabolites.

Authors:  Matthias Buntru; Nils Hahnengress; Alexander Croon; Stefan Schillberg
Journal:  Front Plant Sci       Date:  2022-01-28       Impact factor: 6.627

Review 5.  Biocatalytic synthesis of peptidic natural products and related analogues.

Authors:  Dake Liu; Garret M Rubin; Dipesh Dhakal; Manyun Chen; Yousong Ding
Journal:  iScience       Date:  2021-05-04

Review 6.  Biotechnology Applications of Cell-Free Expression Systems.

Authors:  August Brookwell; Javin P Oza; Filippo Caschera
Journal:  Life (Basel)       Date:  2021-12-08

7.  Biofoundry-assisted expression and characterization of plant proteins.

Authors:  Quentin M Dudley; Yao-Min Cai; Kalyani Kallam; Hubert Debreyne; Jose A Carrasco Lopez; Nicola J Patron
Journal:  Synth Biol (Oxf)       Date:  2021-09-11
  7 in total

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