Literature DB >> 33167616

Expanding the Chemical Diversity of Genetically Encoded Libraries.

Sabrina E Iskandar1, Victoria A Haberman1, Albert A Bowers1,2,3.   

Abstract

The power of ribosomes has increasingly been harnessed for the synthesis and selection of molecular libraries. Technologies, such as phage display, yeast display, and mRNA display, effectively couple genotype to phenotype for the molecular evolution of high affinity epitopes for many therapeutic targets. Genetic code expansion is central to the success of these technologies, allowing researchers to surpass the intrinsic capabilities of the ribosome and access new, genetically encoded materials for these selections. Here, we review techniques for the chemical expansion of genetically encoded libraries, their abilities and limits, and opportunities for further development. Importantly, we also discuss methods and metrics used to assess the efficiency of modification and library diversity with these new techniques.

Entities:  

Keywords:  chemical modification; display technologies; genetically encoded libraries; peptide libraries; quality control metrics; unnatural amino acids

Mesh:

Substances:

Year:  2020        PMID: 33167616      PMCID: PMC8284915          DOI: 10.1021/acscombsci.0c00179

Source DB:  PubMed          Journal:  ACS Comb Sci        ISSN: 2156-8944            Impact factor:   3.903


  214 in total

1.  Selection of optical biosensors from chemisynthetic antibody libraries.

Authors:  Laurent Jespers; Timothy P Bonnert; Greg Winter
Journal:  Protein Eng Des Sel       Date:  2004-11-10       Impact factor: 1.650

2.  In vitro selection of a photo-responsive peptide aptamer using ribosome display.

Authors:  Mingzhe Liu; Seiichi Tada; Mika Ito; Hiroshi Abe; Yoshihiro Ito
Journal:  Chem Commun (Camb)       Date:  2012-12-18       Impact factor: 6.222

3.  Expanding the amino acid repertoire of ribosomal polypeptide synthesis via the artificial division of codon boxes.

Authors:  Yoshihiko Iwane; Azusa Hitomi; Hiroshi Murakami; Takayuki Katoh; Yuki Goto; Hiroaki Suga
Journal:  Nat Chem       Date:  2016-02-01       Impact factor: 24.427

4.  Directed Evolution of a Cyclized Peptoid-Peptide Chimera against a Cell-Free Expressed Protein and Proteomic Profiling of the Interacting Proteins to Create a Protein-Protein Interaction Inhibitor.

Authors:  Takashi Kawakami; Koji Ogawa; Tomohisa Hatta; Naoki Goshima; Tohru Natsume
Journal:  ACS Chem Biol       Date:  2016-03-24       Impact factor: 5.100

5.  Adding L-3-(2-Naphthyl)alanine to the genetic code of E. coli.

Authors:  Lei Wang; Ansgar Brock; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2002-03-06       Impact factor: 15.419

6.  Synthesis of fused tricyclic peptides using a reprogrammed translation system and chemical modification.

Authors:  Nasir Kato Bashiruddin; Masanobu Nagano; Hiroaki Suga
Journal:  Bioorg Chem       Date:  2015-06-20       Impact factor: 5.275

7.  Enzymatic aminoacylation of tRNA with unnatural amino acids.

Authors:  Matthew C T Hartman; Kristopher Josephson; Jack W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-13       Impact factor: 11.205

8.  Addition of p-azido-L-phenylalanine to the genetic code of Escherichia coli.

Authors:  Jason W Chin; Stephen W Santoro; Andrew B Martin; David S King; Lei Wang; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2002-08-07       Impact factor: 15.419

9.  Phage-encoded combinatorial chemical libraries based on bicyclic peptides.

Authors:  Christian Heinis; Trevor Rutherford; Stephan Freund; Greg Winter
Journal:  Nat Chem Biol       Date:  2009-07       Impact factor: 15.040

10.  Targeting Bacillus anthracis toxicity with a genetically selected inhibitor of the PA/CMG2 protein-protein interaction.

Authors:  Abigail L Male; Fedor Forafonov; Francesco Cuda; Gong Zhang; Siqi Zheng; Petra C F Oyston; Peng R Chen; E Diane Williamson; Ali Tavassoli
Journal:  Sci Rep       Date:  2017-06-08       Impact factor: 4.379

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  5 in total

Review 1.  New Horizons: Next-Generation Insulin Analogues: Structural Principles and Clinical Goals.

Authors:  Mark A Jarosinski; Yen-Shan Chen; Nicolás Varas; Balamurugan Dhayalan; Deepak Chatterjee; Michael A Weiss
Journal:  J Clin Endocrinol Metab       Date:  2022-03-24       Impact factor: 5.958

2.  mRNA Display Reaches for the Clinic with New PCSK9 Inhibitor.

Authors:  Sabrina E Iskandar; Albert A Bowers
Journal:  ACS Med Chem Lett       Date:  2022-08-26       Impact factor: 4.632

3.  Genetically-encoded discovery of proteolytically stable bicyclic inhibitors for morphogen NODAL.

Authors:  Jeffrey Y-K Wong; Raja Mukherjee; Jiayuan Miao; Olena Bilyk; Vivian Triana; Mark Miskolzie; Antoine Henninot; John J Dwyer; Serhii Kharchenko; Anna Iampolska; Dmitriy M Volochnyuk; Yu-Shan Lin; Lynne-Marie Postovit; Ratmir Derda
Journal:  Chem Sci       Date:  2021-06-17       Impact factor: 9.825

Review 4.  Structural principles of insulin formulation and analog design: A century of innovation.

Authors:  Mark A Jarosinski; Balamurugan Dhayalan; Yen-Shan Chen; Deepak Chatterjee; Nicolás Varas; Michael A Weiss
Journal:  Mol Metab       Date:  2021-08-21       Impact factor: 7.422

Review 5.  Opportunities for Expanding Encoded Chemical Diversification and Improving Hit Enrichment in mRNA-Displayed Peptide Libraries.

Authors:  Paddy R A Melsen; Ryoji Yoshisada; Seino A K Jongkees
Journal:  Chembiochem       Date:  2022-02-18       Impact factor: 3.461

  5 in total

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