Literature DB >> 33556835

Engineering of new-to-nature ribosomally synthesized and post-translationally modified peptide natural products.

Chunyu Wu1, Wilfred A van der Donk2.   

Abstract

Natural products have historically been important lead sources for drug development, particularly to combat infectious diseases. Increasingly, their structurally complex scaffolds are also envisioned as leads for applications for which they did not evolve, an approach aided by engineering of new-to-nature analogs. Ribosomally synthesized and post-translationally modified peptides (RiPPs) are promising candidates for bioengineering because they are genetically encoded and their biosynthetic enzymes display significant substrate tolerance. This review highlights recent advances in the discovery of highly unusual new reactions by genome mining and the application of engineering approaches to generate and screen novel RiPP variants. Furthermore, through the use of synthetic biology approaches, hybrid molecules with enhanced or completely new activities have been identified, which opens the door for future advancement of RiPPs as potential next-generation therapeutics.
Copyright © 2021 Elsevier Ltd. All rights reserved.

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Year:  2021        PMID: 33556835      PMCID: PMC8238801          DOI: 10.1016/j.copbio.2020.12.022

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   10.279


  63 in total

1.  Structure and mechanism of the tRNA-dependent lantibiotic dehydratase NisB.

Authors:  Manuel A Ortega; Yue Hao; Qi Zhang; Mark C Walker; Wilfred A van der Donk; Satish K Nair
Journal:  Nature       Date:  2014-10-26       Impact factor: 49.962

2.  Directing Biosynthesis: Practical Supply of Natural and Unnatural Cyanobactins.

Authors:  D Sardar; M D Tianero; E W Schmidt
Journal:  Methods Enzymol       Date:  2016-03-16       Impact factor: 1.600

3.  Ribosomal Natural Products, Tailored To Fit.

Authors:  Michael A Funk; Wilfred A van der Donk
Journal:  Acc Chem Res       Date:  2017-07-06       Impact factor: 22.384

4.  Nonribosomal Peptide Extension by a Peptide Amino-Acyl tRNA Ligase.

Authors:  Zhengan Zhang; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2019-12-09       Impact factor: 15.419

5.  Total synthesis reveals atypical atropisomerism in a small-molecule natural product, tryptorubin A.

Authors:  Solomon H Reisberg; Yang Gao; Allison S Walker; Eric J N Helfrich; Jon Clardy; Phil S Baran
Journal:  Science       Date:  2020-01-02       Impact factor: 47.728

6.  Molecular Basis for Autocatalytic Backbone N-Methylation in RiPP Natural Product Biosynthesis.

Authors:  Chayanid Ongpipattanakul; Satish K Nair
Journal:  ACS Chem Biol       Date:  2018-09-25       Impact factor: 5.100

7.  Production of a class II two-component lantibiotic of Streptococcus pneumoniae using the class I nisin synthetic machinery and leader sequence.

Authors:  Joanna A Majchrzykiewicz; Jacek Lubelski; Gert N Moll; Anneke Kuipers; Jetta J E Bijlsma; Oscar P Kuipers; Rick Rink
Journal:  Antimicrob Agents Chemother       Date:  2010-01-25       Impact factor: 5.191

Review 8.  New developments in RiPP discovery, enzymology and engineering.

Authors:  Manuel Montalbán-López; Thomas A Scott; Sangeetha Ramesh; Imran R Rahman; Auke J van Heel; Jakob H Viel; Vahe Bandarian; Elke Dittmann; Olga Genilloud; Yuki Goto; María José Grande Burgos; Colin Hill; Seokhee Kim; Jesko Koehnke; John A Latham; A James Link; Beatriz Martínez; Satish K Nair; Yvain Nicolet; Sylvie Rebuffat; Hans-Georg Sahl; Dipti Sareen; Eric W Schmidt; Lutz Schmitt; Konstantin Severinov; Roderich D Süssmuth; Andrew W Truman; Huan Wang; Jing-Ke Weng; Gilles P van Wezel; Qi Zhang; Jin Zhong; Jörn Piel; Douglas A Mitchell; Oscar P Kuipers; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2020-09-16       Impact factor: 15.111

9.  A new genome-mining tool redefines the lasso peptide biosynthetic landscape.

Authors:  Jonathan I Tietz; Christopher J Schwalen; Parth S Patel; Tucker Maxson; Patricia M Blair; Hua-Chia Tai; Uzma I Zakai; Douglas A Mitchell
Journal:  Nat Chem Biol       Date:  2017-02-28       Impact factor: 15.040

10.  Uncovering the unexplored diversity of thioamidated ribosomal peptides in Actinobacteria using the RiPPER genome mining tool.

Authors:  Javier Santos-Aberturas; Govind Chandra; Luca Frattaruolo; Rodney Lacret; Thu H Pham; Natalia M Vior; Tom H Eyles; Andrew W Truman
Journal:  Nucleic Acids Res       Date:  2019-05-21       Impact factor: 19.160

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  5 in total

Review 1.  Marine Bacterial Ribosomal Peptides: Recent Genomics- and Synthetic Biology-Based Discoveries and Biosynthetic Studies.

Authors:  Linda Sukmarini
Journal:  Mar Drugs       Date:  2022-08-24       Impact factor: 6.085

2.  Cytochrome P450Blt Enables Versatile Peptide Cyclisation to Generate Histidine- and Tyrosine-Containing Crosslinked Tripeptide Building Blocks.

Authors:  Yongwei Zhao; Edward Marschall; Maxine Treisman; Alasdair McKay; Leo Padva; Max Crüsemann; David R Nelson; David L Steer; Ralf B Schittenhelm; Julien Tailhades; Max J Cryle
Journal:  Angew Chem Int Ed Engl       Date:  2022-08-03       Impact factor: 16.823

Review 3.  Biocatalytic synthesis of peptidic natural products and related analogues.

Authors:  Dake Liu; Garret M Rubin; Dipesh Dhakal; Manyun Chen; Yousong Ding
Journal:  iScience       Date:  2021-05-04

4.  Isolation and Analysis of the Nisin Biosynthesis Complex NisBTC: further Insights into Their Cooperative Action.

Authors:  Jingqi Chen; Oscar P Kuipers
Journal:  mBio       Date:  2021-10-05       Impact factor: 7.867

5.  Semisynthetic Macrocyclic Lipo-lanthipeptides Display Antimicrobial Activity Against Bacterial Pathogens.

Authors:  Xinghong Zhao; Yanli Xu; Jakob H Viel; Oscar P Kuipers
Journal:  ACS Synth Biol       Date:  2021-08-04       Impact factor: 5.110

  5 in total

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