Literature DB >> 32058267

Recent advances in the use of genetically encodable optical tools to elicit and monitor signaling events.

Ha Neul Lee1, Sohum Mehta1, Jin Zhang2.   

Abstract

Cells rely on a complex network of spatiotemporally regulated signaling activities to effectively transduce information from extracellular cues to intracellular machinery. To probe this activity architecture, researchers have developed an extensive molecular tool kit of fluorescent biosensors and optogenetic actuators capable of monitoring and manipulating various signaling activities with high spatiotemporal precision. The goal of this review is to provide readers with an overview of basic concepts and recent advances in the development and application of genetically encodable biosensors and optogenetic tools for understanding signaling activity.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Biosensors; Optogenetic tools; Signaling

Mesh:

Substances:

Year:  2020        PMID: 32058267      PMCID: PMC7247941          DOI: 10.1016/j.ceb.2020.01.007

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  88 in total

1.  The tightly regulated copper window in yeast.

Authors:  Seraphine V Wegner; Fei Sun; Nick Hernandez; Chuan He
Journal:  Chem Commun (Camb)       Date:  2010-12-21       Impact factor: 6.222

2.  A light-driven sodium ion pump in marine bacteria.

Authors:  Keiichi Inoue; Hikaru Ono; Rei Abe-Yoshizumi; Susumu Yoshizawa; Hiroyasu Ito; Kazuhiro Kogure; Hideki Kandori
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

3.  Genetically encoded fluorescent sensors for intracellular NADH detection.

Authors:  Yuzheng Zhao; Jing Jin; Qingxun Hu; Hai-Meng Zhou; Jing Yi; Zhenhang Yu; Lei Xu; Xue Wang; Yi Yang; Joseph Loscalzo
Journal:  Cell Metab       Date:  2011-10-05       Impact factor: 27.287

Review 4.  The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins.

Authors:  Erik A Rodriguez; Robert E Campbell; John Y Lin; Michael Z Lin; Atsushi Miyawaki; Amy E Palmer; Xiaokun Shu; Jin Zhang; Roger Y Tsien
Journal:  Trends Biochem Sci       Date:  2016-11-01       Impact factor: 13.807

5.  Detecting cAMP-induced Epac activation by fluorescence resonance energy transfer: Epac as a novel cAMP indicator.

Authors:  Bas Ponsioen; Jun Zhao; Jurgen Riedl; Fried Zwartkruis; Gerard van der Krogt; Manuela Zaccolo; Wouter H Moolenaar; Johannes L Bos; Kees Jalink
Journal:  EMBO Rep       Date:  2004-12       Impact factor: 8.807

6.  High-fidelity optical reporting of neuronal electrical activity with an ultrafast fluorescent voltage sensor.

Authors:  François St-Pierre; Jesse D Marshall; Ying Yang; Yiyang Gong; Mark J Schnitzer; Michael Z Lin
Journal:  Nat Neurosci       Date:  2014-04-22       Impact factor: 24.884

7.  Optocontrol of glutamate receptor activity by single side-chain photoisomerization.

Authors:  Viktoria Klippenstein; Christian Hoppmann; Shixin Ye; Lei Wang; Pierre Paoletti
Journal:  Elife       Date:  2017-05-23       Impact factor: 8.140

8.  Smallest near-infrared fluorescent protein evolved from cyanobacteriochrome as versatile tag for spectral multiplexing.

Authors:  Olena S Oliinyk; Anton A Shemetov; Sergei Pletnev; Daria M Shcherbakova; Vladislav V Verkhusha
Journal:  Nat Commun       Date:  2019-01-17       Impact factor: 14.919

9.  Optogenetic manipulation of cGMP in cells and animals by the tightly light-regulated guanylyl-cyclase opsin CyclOp.

Authors:  Shiqiang Gao; Jatin Nagpal; Martin W Schneider; Vera Kozjak-Pavlovic; Georg Nagel; Alexander Gottschalk
Journal:  Nat Commun       Date:  2015-09-08       Impact factor: 14.919

10.  Single-fluorophore biosensors for sensitive and multiplexed detection of signalling activities.

Authors:  Sohum Mehta; Yong Zhang; Richard H Roth; Jin-Fan Zhang; Albert Mo; Brian Tenner; Richard L Huganir; Jin Zhang
Journal:  Nat Cell Biol       Date:  2018-09-24       Impact factor: 28.824

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  7 in total

Review 1.  Towards a physical understanding of developmental patterning.

Authors:  Jose Negrete; Andrew C Oates
Journal:  Nat Rev Genet       Date:  2021-05-10       Impact factor: 53.242

Review 2.  A cellular perspective of bias at G protein-coupled receptors.

Authors:  Thomas J Fernandez; Monica De Maria; Braden T Lobingier
Journal:  Protein Sci       Date:  2020-04-27       Impact factor: 6.725

Review 3.  Optogenetics: The Art of Illuminating Complex Signaling Pathways.

Authors:  Mark Shaaya; Jordan Fauser; Andrei V Karginov
Journal:  Physiology (Bethesda)       Date:  2021-01-01

Review 4.  A forecast for large-scale, predictive biology: Lessons from meteorology.

Authors:  Markus W Covert; Taryn E Gillies; Takamasa Kudo; Eran Agmon
Journal:  Cell Syst       Date:  2021-06-16       Impact factor: 11.091

Review 5.  Optogenetic Approaches for the Spatiotemporal Control of Signal Transduction Pathways.

Authors:  Markus M Kramer; Levin Lataster; Wilfried Weber; Gerald Radziwill
Journal:  Int J Mol Sci       Date:  2021-05-18       Impact factor: 5.923

Review 6.  Live imaging approach of dynamic multicellular responses in ERK signaling during vertebrate tissue development.

Authors:  Tsuyoshi Hirashima
Journal:  Biochem J       Date:  2022-01-28       Impact factor: 3.857

7.  Single-cell imaging of ERK and Akt activation dynamics and heterogeneity induced by G-protein-coupled receptors.

Authors:  Sergei Chavez-Abiega; Max L B Grönloh; Theodorus W J Gadella; Frank J Bruggeman; Joachim Goedhart
Journal:  J Cell Sci       Date:  2022-03-11       Impact factor: 5.285

  7 in total

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