Literature DB >> 27814948

The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins.

Erik A Rodriguez1, Robert E Campbell2, John Y Lin3, Michael Z Lin4, Atsushi Miyawaki5, Amy E Palmer6, Xiaokun Shu7, Jin Zhang8, Roger Y Tsien9.   

Abstract

Over the past 20 years, protein engineering has been extensively used to improve and modify the fundamental properties of fluorescent proteins (FPs) with the goal of adapting them for a fantastic range of applications. FPs have been modified by a combination of rational design, structure-based mutagenesis, and countless cycles of directed evolution (gene diversification followed by selection of clones with desired properties) that have collectively pushed the properties to photophysical and biochemical extremes. In this review, we provide both a summary of the progress that has been made during the past two decades, and a broad overview of the current state of FP development and applications in mammalian systems.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27814948      PMCID: PMC5272834          DOI: 10.1016/j.tibs.2016.09.010

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  169 in total

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2.  Neuronal Activity and CaMKII Regulate Kinesin-Mediated Transport of Synaptic AMPARs.

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Review 3.  Genetically encoded molecular probes to visualize and perturb signaling dynamics in living biological systems.

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Journal:  J Cell Sci       Date:  2014-03-15       Impact factor: 5.285

4.  Characterization and development of photoactivatable fluorescent proteins for single-molecule-based superresolution imaging.

Authors:  Siyuan Wang; Jeffrey R Moffitt; Graham T Dempsey; X Sunney Xie; Xiaowei Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-27       Impact factor: 11.205

5.  Imaging neural spiking in brain tissue using FRET-opsin protein voltage sensors.

Authors:  Yiyang Gong; Mark J Wagner; Jin Zhong Li; Mark J Schnitzer
Journal:  Nat Commun       Date:  2014-04-22       Impact factor: 14.919

6.  Imaging cellular signals in the heart in vivo: Cardiac expression of the high-signal Ca2+ indicator GCaMP2.

Authors:  Yvonne N Tallini; Masamichi Ohkura; Bum-Rak Choi; Guangju Ji; Keiji Imoto; Robert Doran; Jane Lee; Patricia Plan; Jason Wilson; Hong-Bo Xin; Atsushi Sanbe; James Gulick; John Mathai; Jeffrey Robbins; Guy Salama; Junichi Nakai; Michael I Kotlikoff
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-13       Impact factor: 11.205

7.  Subcellular Imaging of Voltage and Calcium Signals Reveals Neural Processing In Vivo.

Authors:  Helen H Yang; François St-Pierre; Xulu Sun; Xiaozhe Ding; Michael Z Lin; Thomas R Clandinin
Journal:  Cell       Date:  2016-06-02       Impact factor: 41.582

8.  Visualizing spatiotemporal dynamics of multicellular cell-cycle progression.

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Journal:  Cell       Date:  2008-02-08       Impact factor: 41.582

9.  Counting molecules in single organelles with superresolution microscopy allows tracking of the endosome maturation trajectory.

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10.  Super-resolution imaging and tracking of protein-protein interactions in sub-diffraction cellular space.

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  166 in total

1.  ATP-Independent Bioluminescent Reporter Variants To Improve in Vivo Imaging.

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Journal:  ACS Chem Biol       Date:  2019-04-17       Impact factor: 5.100

2.  A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells.

Authors:  Esther Braselmann; Amy E Palmer
Journal:  Methods Enzymol       Date:  2020-04-13       Impact factor: 1.600

Review 3.  Live-cell imaging of cell signaling using genetically encoded fluorescent reporters.

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Journal:  FEBS J       Date:  2017-07-06       Impact factor: 5.542

4.  Modulation of Fluorescent Protein Chromophores To Detect Protein Aggregation with Turn-On Fluorescence.

Authors:  Yu Liu; Charles H Wolstenholme; Gregory C Carter; Hongbin Liu; Hang Hu; Leeann S Grainger; Kun Miao; Matthew Fares; Conner A Hoelzel; Hemant P Yennawar; Gang Ning; Manyu Du; Lu Bai; Xiaosong Li; Xin Zhang
Journal:  J Am Chem Soc       Date:  2018-06-12       Impact factor: 15.419

Review 5.  Tracking RNA with light: selection, structure, and design of fluorescence turn-on RNA aptamers.

Authors:  Robert J Trachman; Adrian R Ferré-D'Amaré
Journal:  Q Rev Biophys       Date:  2019-08-19       Impact factor: 5.318

Review 6.  From fluorescent proteins to fluorogenic RNAs: Tools for imaging cellular macromolecules.

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Journal:  Protein Sci       Date:  2019-05-11       Impact factor: 6.725

Review 7.  Towards a physical understanding of developmental patterning.

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Review 8.  Structural Principles of Fluorescent RNA Aptamers.

Authors:  Robert J Trachman; Lynda Truong; Adrian R Ferré-D'Amaré
Journal:  Trends Pharmacol Sci       Date:  2017-07-17       Impact factor: 14.819

9.  A Robust Bioderived Wavelength-Specific Photosensor Based on BLUF Proteins.

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10.  Versatile On-Demand Fluorescent Labeling of Fusion Proteins Using Fluorescence-Activating and Absorption-Shifting Tag (FAST).

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