Literature DB >> 31944951

A Deep Learning Approach to Photoacoustic Wavefront Localization in Deep-Tissue Medium.

Kerrick Johnstonbaugh, Sumit Agrawal, Deepit Abhishek Durairaj, Christopher Fadden, Ajay Dangi, Sri Phani Krishna Karri, Sri-Rajasekhar Kothapalli.   

Abstract

Optical photons undergo strong scattering when propagating beyond 1-mm deep inside biological tissue. Finding the origin of these diffused optical wavefronts is a challenging task. Breaking through the optical diffusion limit, photoacoustic (PA) imaging (PAI) provides high-resolution and label-free images of human vasculature with high contrast due to the optical absorption of hemoglobin. In real-time PAI, an ultrasound transducer array detects PA signals, and B-mode images are formed by delay-and-sum or frequency-domain beamforming. Fundamentally, the strength of a PA signal is proportional to the local optical fluence, which decreases with the increasing depth due to depth-dependent optical attenuation. This limits the visibility of deep-tissue vasculature or other light-absorbing PA targets. To address this practical challenge, an encoder-decoder convolutional neural network architecture was constructed with custom modules and trained to identify the origin of the PA wavefronts inside an optically scattering deep-tissue medium. A comprehensive ablation study provides strong evidence that each module improves the localization accuracy. The network was trained on model-based simulated PA signals produced by 16 240 blood-vessel targets subjected to both optical scattering and Gaussian noise. Test results on 4600 simulated and five experimental PA signals collected under various scattering conditions show that the network can localize the targets with a mean error less than 30 microns (standard deviation 20.9 microns) for targets below 40-mm imaging depth and 1.06 mm (standard deviation 2.68 mm) for targets at a depth between 40 and 60 mm. The proposed work has broad applications such as diffused optical wavefront shaping, circulating melanoma cell detection, and real-time vascular surgeries (e.g., deep-vein thrombosis).

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Year:  2020        PMID: 31944951      PMCID: PMC7769001          DOI: 10.1109/TUFFC.2020.2964698

Source DB:  PubMed          Journal:  IEEE Trans Ultrason Ferroelectr Freq Control        ISSN: 0885-3010            Impact factor:   2.725


  25 in total

Review 1.  Looking and listening to light: the evolution of whole-body photonic imaging.

Authors:  Vasilis Ntziachristos; Jorge Ripoll; Lihong V Wang; Ralph Weissleder
Journal:  Nat Biotechnol       Date:  2005-03       Impact factor: 54.908

2.  Multispectral Optoacoustic Tomography for Assessment of Crohn's Disease Activity.

Authors:  Ferdinand Knieling; Clemens Neufert; Arndt Hartmann; Jing Claussen; Alexander Urich; Cornelia Egger; Marcel Vetter; Sarah Fischer; Lukas Pfeifer; Alexander Hagel; Christian Kielisch; Rüdiger S Görtz; Dane Wildner; Matthias Engel; Jens Röther; Wolfgang Uter; Jürgen Siebler; Raja Atreya; Wolfgang Rascher; Deike Strobel; Markus F Neurath; Maximilian J Waldner
Journal:  N Engl J Med       Date:  2017-03-30       Impact factor: 91.245

3.  Noninvasive label-free detection of circulating white and red blood clots in deep vessels with a focused photoacoustic probe.

Authors:  Mazen A Juratli; Yulian A Menyaev; Mustafa Sarimollaoglu; Alexander V Melerzanov; Dmitry A Nedosekin; William C Culp; James Y Suen; Ekaterina I Galanzha; Vladimir P Zharov
Journal:  Biomed Opt Express       Date:  2018-10-23       Impact factor: 3.732

4.  Biomedical photoacoustic imaging.

Authors:  Paul Beard
Journal:  Interface Focus       Date:  2011-06-22       Impact factor: 3.906

Review 5.  Optical properties of biological tissues: a review.

Authors:  Steven L Jacques
Journal:  Phys Med Biol       Date:  2013-05-10       Impact factor: 3.609

6.  Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction.

Authors:  Hamid Dehghani; Matthew E Eames; Phaneendra K Yalavarthy; Scott C Davis; Subhadra Srinivasan; Colin M Carpenter; Brian W Pogue; Keith D Paulsen
Journal:  Commun Numer Methods Eng       Date:  2008-08-15

7.  Dual-Modality Photoacoustic and Ultrasound Imaging System for Noninvasive Sentinel Lymph Node Detection in Patients with Breast Cancer.

Authors:  Alejandro Garcia-Uribe; Todd N Erpelding; Arie Krumholz; Haixin Ke; Konstantin Maslov; Catherine Appleton; Julie A Margenthaler; Lihong V Wang
Journal:  Sci Rep       Date:  2015-10-29       Impact factor: 4.379

8.  Model-Based Learning for Accelerated, Limited-View 3-D Photoacoustic Tomography.

Authors:  Andreas Hauptmann; Felix Lucka; Marta Betcke; Nam Huynh; Jonas Adler; Ben Cox; Paul Beard; Sebastien Ourselin; Simon Arridge
Journal:  IEEE Trans Med Imaging       Date:  2018-06       Impact factor: 11.037

9.  Evaluation of Ovarian Cancer: Initial Application of Coregistered Photoacoustic Tomography and US.

Authors:  Sreyankar Nandy; Atahar Mostafa; Ian S Hagemann; Matthew A Powell; Eghbal Amidi; Kathryn Robinson; David G Mutch; Cary Siegel; Quing Zhu
Journal:  Radiology       Date:  2018-09-11       Impact factor: 29.146

10.  Single-breath-hold photoacoustic computed tomography of the breast.

Authors:  Li Lin; Peng Hu; Junhui Shi; Catherine M Appleton; Konstantin Maslov; Lei Li; Ruiying Zhang; Lihong V Wang
Journal:  Nat Commun       Date:  2018-06-15       Impact factor: 14.919

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  15 in total

1.  Reconstructing Undersampled Photoacoustic Microscopy Images Using Deep Learning.

Authors:  Anthony DiSpirito; Daiwei Li; Tri Vu; Maomao Chen; Dong Zhang; Jianwen Luo; Roarke Horstmeyer; Junjie Yao
Journal:  IEEE Trans Med Imaging       Date:  2021-02-03       Impact factor: 10.048

Review 2.  Photoacoustic-guided surgery from head to toe [Invited].

Authors:  Alycen Wiacek; Muyinatu A Lediju Bell
Journal:  Biomed Opt Express       Date:  2021-03-16       Impact factor: 3.732

3.  Improving Minimum Variance Beamforming with Sub-Aperture Processing for Photoacoustic Imaging.

Authors:  Rashid Al Mukaddim; Rifat Ahmed; Tomy Varghese
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2021-11

4.  A High Sensitivity Transparent Ultrasound Transducer based on PMN-PT for Ultrasound and Photoacoustic Imaging.

Authors:  Haoyang Chen; Shubham Mirg; Mohamed Osman; Sumit Agrawal; Jiacheng Cai; Ryan Biskowitz; Josiah Minotto; Sri-Rajasekhar Kothapalli
Journal:  IEEE Sens Lett       Date:  2021-10-21

5.  Simultaneous Denoising and Localization Network for Photoacoustic Target Localization.

Authors:  Amirsaeed Yazdani; Sumit Agrawal; Kerrick Johnstonbaugh; Sri-Rajasekhar Kothapalli; Vishal Monga
Journal:  IEEE Trans Med Imaging       Date:  2021-08-31       Impact factor: 11.037

Review 6.  Deep Learning in Biomedical Optics.

Authors:  Lei Tian; Brady Hunt; Muyinatu A Lediju Bell; Ji Yi; Jason T Smith; Marien Ochoa; Xavier Intes; Nicholas J Durr
Journal:  Lasers Surg Med       Date:  2021-05-20

7.  Subaperture Processing-Based Adaptive Beamforming for Photoacoustic Imaging.

Authors:  Rashid Al Mukaddim; Rifat Ahmed; Tomy Varghese
Journal:  IEEE Trans Ultrason Ferroelectr Freq Control       Date:  2021-06-29       Impact factor: 3.267

8.  A generative adversarial network for artifact removal in photoacoustic computed tomography with a linear-array transducer.

Authors:  Tri Vu; Mucong Li; Hannah Humayun; Yuan Zhou; Junjie Yao
Journal:  Exp Biol Med (Maywood)       Date:  2020-03-25

9.  Spatiotemporal Coherence Weighting for In Vivo Cardiac Photoacoustic Image Beamformation.

Authors:  Rashid Al Mukaddim; Tomy Varghese
Journal:  IEEE Trans Ultrason Ferroelectr Freq Control       Date:  2021-02-25       Impact factor: 2.725

10.  Comparing Deep Learning Frameworks for Photoacoustic Tomography Image Reconstruction.

Authors:  Ko-Tsung Hsu; Steven Guan; Parag V Chitnis
Journal:  Photoacoustics       Date:  2021-05-15
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