Literature DB >> 20182646

Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction.

Hamid Dehghani1, Matthew E Eames, Phaneendra K Yalavarthy, Scott C Davis, Subhadra Srinivasan, Colin M Carpenter, Brian W Pogue, Keith D Paulsen.   

Abstract

Diffuse optical tomography, also known as near infrared tomography, has been under investigation, for non-invasive functional imaging of tissue, specifically for the detection and characterization of breast cancer or other soft tissue lesions. Much work has been carried out for accurate modeling and image reconstruction from clinical data. NIRFAST, a modeling and image reconstruction package has been developed, which is capable of single wavelength and multi-wavelength optical or functional imaging from measured data. The theory behind the modeling techniques as well as the image reconstruction algorithms is presented here, and 2D and 3D examples are presented to demonstrate its capabilities. The results show that 3D modeling can be combined with measured data from multiple wavelengths to reconstruct chromophore concentrations within the tissue. Additionally it is possible to recover scattering spectra, resulting from the dominant Mie-type scatter present in tissue. Overall, this paper gives a comprehensive over view of the modeling techniques used in diffuse optical tomographic imaging, in the context of NIRFAST software package.

Entities:  

Year:  2008        PMID: 20182646      PMCID: PMC2826796          DOI: 10.1002/cnm.1162

Source DB:  PubMed          Journal:  Commun Numer Methods Eng        ISSN: 1069-8299


  53 in total

1.  Fluorescence optical diffusion tomography.

Authors:  Adam B Milstein; Seungseok Oh; Kevin J Webb; Charles A Bouman; Quan Zhang; David A Boas; R P Millane
Journal:  Appl Opt       Date:  2003-06-01       Impact factor: 1.980

2.  Breast deformation modelling for image reconstruction in near infrared optical tomography.

Authors:  Hamid Dehghani; Marvin M Doyley; Brian W Pogue; Shudong Jiang; Jason Geng; Keith D Paulsen
Journal:  Phys Med Biol       Date:  2004-04-07       Impact factor: 3.609

3.  Combining near-infrared tomography and magnetic resonance imaging to study in vivo breast tissue: implementation of a Laplacian-type regularization to incorporate magnetic resonance structure.

Authors:  Ben Brooksby; Shudong Jiang; Hamid Dehghani; Brian W Pogue; Keith D Paulsen; John Weaver; Christine Kogel; Steven P Poplack
Journal:  J Biomed Opt       Date:  2005 Sep-Oct       Impact factor: 3.170

4.  Diffuse optical tomography with spectral constraints and wavelength optimization.

Authors:  Alper Corlu; Regine Choe; Turgut Durduran; Kijoon Lee; Martin Schweiger; Simon R Arridge; Elizabeth M C Hillman; Arjun G Yodh
Journal:  Appl Opt       Date:  2005-04-10       Impact factor: 1.980

5.  Measurement of the absolute optical properties and cerebral blood volume of the adult human head with hybrid differential and spatially resolved spectroscopy.

Authors:  Terence S Leung; Ilias Tachtsidis; Martin Smith; David T Delpy; Clare E Elwell
Journal:  Phys Med Biol       Date:  2006-01-19       Impact factor: 3.609

6.  Weight-matrix structured regularization provides optimal generalized least-squares estimate in diffuse optical tomography.

Authors:  Phaneendra K Yalavarthy; Brian W Pogue; Hamid Dehghani; Keith D Paulsen
Journal:  Med Phys       Date:  2007-06       Impact factor: 4.071

7.  Spectroscopic diffuse optical tomography for the quantitative assessment of hemoglobin concentration and oxygen saturation in breast tissue.

Authors:  T O McBride; B W Pogue; E D Gerety; S B Poplack; U L Osterberg; K D Paulsen
Journal:  Appl Opt       Date:  1999-09-01       Impact factor: 1.980

Review 8.  Probing physiology and molecular function using optical imaging: applications to breast cancer.

Authors:  V Ntziachristos; B Chance
Journal:  Breast Cancer Res       Date:  2000-11-29       Impact factor: 6.466

9.  Image reconstruction of effective Mie scattering parameters of breast tissue in vivo with near-infrared tomography.

Authors:  Xin Wang; Brian W Pogue; Shudong Jiang; Hamid Dehghani; Xiaomei Song; Subhadra Srinivasan; Ben A Brooksby; Keith D Paulsen; Christine Kogel; Steven P Poplack; Wendy A Wells
Journal:  J Biomed Opt       Date:  2006 Jul-Aug       Impact factor: 3.170

10.  Noninvasive functional optical spectroscopy of human breast tissue.

Authors:  N Shah; A Cerussi; C Eker; J Espinoza; J Butler; J Fishkin; R Hornung; B Tromberg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-03       Impact factor: 11.205

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  220 in total

1.  Functional near-infrared spectroscopy (fNIRS) of brain function during active balancing using a video game system.

Authors:  Helmet Karim; Benjamin Schmidt; Dwight Dart; Nancy Beluk; Theodore Huppert
Journal:  Gait Posture       Date:  2011-11-09       Impact factor: 2.840

Review 2.  Implicit and explicit prior information in near-infrared spectral imaging: accuracy, quantification and diagnostic value.

Authors:  Brian W Pogue; Scott C Davis; Frederic Leblond; Michael A Mastanduno; Hamid Dehghani; Keith D Paulsen
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2011-11-28       Impact factor: 4.226

3.  System development for high frequency ultrasound-guided fluorescence quantification of skin layers.

Authors:  Josiah D Gruber; Akshat Paliwal; Venkataramanan Krishnaswamy; Hamid Ghadyani; Michael Jermyn; Julie A O'Hara; Scott C Davis; Joanna S Kerley-Hamilton; Nicholas W Shworak; Edward V Maytin; Tayyaba Hasan; Brian W Pogue
Journal:  J Biomed Opt       Date:  2010 Mar-Apr       Impact factor: 3.170

4.  Application of spectral derivative data in visible and near-infrared spectroscopy.

Authors:  Hamid Dehghani; Frederic Leblond; Brian W Pogue; Fabien Chauchard
Journal:  Phys Med Biol       Date:  2010-05-26       Impact factor: 3.609

5.  Individual differences in regional cortical volumes across the life span are associated with regional optical measures of arterial elasticity.

Authors:  Antonio M Chiarelli; Mark A Fletcher; Chin Hong Tan; Kathy A Low; Edward L Maclin; Benjamin Zimmerman; Tania Kong; Alexander Gorsuch; Gabriele Gratton; Monica Fabiani
Journal:  Neuroimage       Date:  2017-09-01       Impact factor: 6.556

6.  Direct Regularization From Co-Registered Contrast MRI Improves Image Quality of MRI-Guided Near-Infrared Spectral Tomography of Breast Lesions.

Authors:  Limin Zhang; Shudong Jiang; Yan Zhao; Jinchao Feng; Brian W Pogue; Keith D Paulsen
Journal:  IEEE Trans Med Imaging       Date:  2018-05       Impact factor: 10.048

7.  Adaptable near-infrared spectroscopy fiber array for improved coupling to different breast sizes during clinical MRI.

Authors:  Michael A Mastanduno; Fadi El-Ghussein; Shudong Jiang; Roberta Diflorio-Alexander; Xu Junqing; Yin Hong; Brian W Pogue; Keith D Paulsen
Journal:  Acad Radiol       Date:  2014-02       Impact factor: 3.173

Review 8.  Hierarchical clustering method to improve transrectal ultrasound-guided diffuse optical tomography for prostate cancer imaging.

Authors:  Venkaiah C Kavuri; Hanli Liu
Journal:  Acad Radiol       Date:  2014-02       Impact factor: 3.173

9.  Structured illumination diffuse optical tomography for noninvasive functional neuroimaging in mice.

Authors:  Matthew D Reisman; Zachary E Markow; Adam Q Bauer; Joseph P Culver
Journal:  Neurophotonics       Date:  2017-04-13       Impact factor: 3.593

10.  Non-invasive diffuse correlation tomography reveals spatial and temporal blood flow differences in murine bone grafting approaches.

Authors:  Songfeng Han; Ashley R Proctor; Joseph B Vella; Danielle S W Benoit; Regine Choe
Journal:  Biomed Opt Express       Date:  2016-08-09       Impact factor: 3.732

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