Literature DB >> 33939612

Simultaneous Denoising and Localization Network for Photoacoustic Target Localization.

Amirsaeed Yazdani, Sumit Agrawal, Kerrick Johnstonbaugh, Sri-Rajasekhar Kothapalli, Vishal Monga.   

Abstract

A significant research problem of recent interest is the localization of targets like vessels, surgical needles, and tumors in photoacoustic (PA) images.To achieve accurate localization, a high photoacoustic signal-to-noise ratio (SNR) is required. However, this is not guaranteed for deep targets, as optical scattering causes an exponential decay in optical fluence with respect to tissue depth. To address this, we develop a novel deep learning method designed to explicitly exhibit robustness to noise present in photoacoustic radio-frequency (RF) data. More precisely, we describe and evaluate a deep neural network architecture consisting of a shared encoder and two parallel decoders. One decoder extracts the target coordinates from the input RF data while the other boosts the SNR and estimates clean RF data. The joint optimization of the shared encoder and dual decoders lends significant noise robustness to the features extracted by the encoder, which in turn enables the network to contain detailed information about deep targets that may be obscured by noise. Additional custom layers and newly proposed regularizers in the training loss function (designed based on observed RF data signal and noise behavior) serve to increase the SNR in the cleaned RF output and improve model performance. To account for depth-dependent strong optical scattering, our network was trained with simulated photoacoustic datasets of targets embedded at different depths inside tissue media of different scattering levels. The network trained on this novel dataset accurately locates targets in experimental PA data that is clinically relevant with respect to the localization of vessels, needles, or brachytherapy seeds. We verify the merits of the proposed architecture by outperforming the state of the art on both simulated and experimental datasets.

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Year:  2021        PMID: 33939612      PMCID: PMC8526152          DOI: 10.1109/TMI.2021.3077187

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   11.037


  29 in total

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Authors:  Muyinatu A Lediju Bell; Nathanael P Kuo; Danny Y Song; Jin U Kang; Emad M Boctor
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Journal:  N Engl J Med       Date:  2017-03-30       Impact factor: 91.245

3.  Biomedical photoacoustic imaging.

Authors:  Paul Beard
Journal:  Interface Focus       Date:  2011-06-22       Impact factor: 3.906

Review 4.  Optical properties of biological tissues: a review.

Authors:  Steven L Jacques
Journal:  Phys Med Biol       Date:  2013-05-10       Impact factor: 3.609

5.  Deep Neural Network-Based Sinogram Super-Resolution and Bandwidth Enhancement for Limited-Data Photoacoustic Tomography.

Authors:  Navchetan Awasthi; Gaurav Jain; Sandeep Kumar Kalva; Manojit Pramanik; Phaneendra K Yalavarthy
Journal:  IEEE Trans Ultrason Ferroelectr Freq Control       Date:  2020-11-24       Impact factor: 2.725

6.  LV-GAN: A deep learning approach for limited-view optoacoustic imaging based on hybrid datasets.

Authors:  Tong Lu; Tingting Chen; Feng Gao; Biao Sun; Vasilis Ntziachristos; Jiao Li
Journal:  J Biophotonics       Date:  2020-11-03       Impact factor: 3.207

7.  Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction.

Authors:  Hamid Dehghani; Matthew E Eames; Phaneendra K Yalavarthy; Scott C Davis; Subhadra Srinivasan; Colin M Carpenter; Brian W Pogue; Keith D Paulsen
Journal:  Commun Numer Methods Eng       Date:  2008-08-15

Review 8.  Photoacoustic imaging in cancer detection, diagnosis, and treatment guidance.

Authors:  Srivalleesha Mallidi; Geoffrey P Luke; Stanislav Emelianov
Journal:  Trends Biotechnol       Date:  2011-02-15       Impact factor: 19.536

9.  Photoacoustic Imaging for Cancer Detection and Staging.

Authors:  Mohammad Mehrmohammadi; Soon Joon Yoon; Douglas Yeager; Stanislav Y Emelianov
Journal:  Curr Mol Imaging       Date:  2013-03

10.  Single-breath-hold photoacoustic computed tomography of the breast.

Authors:  Li Lin; Peng Hu; Junhui Shi; Catherine M Appleton; Konstantin Maslov; Lei Li; Ruiying Zhang; Lihong V Wang
Journal:  Nat Commun       Date:  2018-06-15       Impact factor: 14.919

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