| Literature DB >> 31885801 |
ShiDa Chen1, XiaoYu Wang1, Muhammad Farrukh Nisar1, Mao Lin2, Julia Li Zhong1,2.
Abstract
Ultraviolet (UV) irradiation can be considered as a double-edged sword: not only is it a crucial environmental factor that can cause skin-related disorders but it can also be used for phototherapy of skin diseases. Inducible heme oxygenase-1 (HO-1) in response to a variety of stimuli, including UV exposure, is vital to maintain cell homeostasis. Heme oxygenase-2 (HO-2), another member of the heme oxygenase family, is constitutively expressed. In this review, we discuss how heme oxygenase (HO), a vital rate-limiting enzyme, participates in heme catabolism and cytoprotection. Phylogenetic analysis showed that there may exist a functional differentiation between HO-1 and HO-2 during evolution. Furthermore, depending on functions in immunomodulation and antioxidation, HO-1 participates in disease progression, especially in pathogenesis of skin diseases, such as vitiligo and psoriasis. To further investigate the particular role of HO-1 in diseases, we summarized the profile of the HO enzyme system and its related signaling pathways, such as Nrf2 and endoplasmic reticulum crucial signaling, both known to regulate HO-1 expression. Furthermore, we report on a C-terminal truncation of HO-1, which is generally considered as a signal molecule. Also, a newly identified alternative splice isoform of HO-1 not only provides us a novel perspective on comprehensive HO-1 alternative splicing but also offers us a basis to clarify the relationship between HO-1 transcripts and oxidative diseases. To conclude, the HO system is not only involved in heme catabolism but also involved in biological processes related to the pathogenesis of certain diseases, even though the mechanism of disease progression still remains sketchy. Further understanding the role of the HO system and its relationship to UV is helpful for revealing the HO-related signaling networks and the pathogenesis of many diseases.Entities:
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Year: 2019 PMID: 31885801 PMCID: PMC6907065 DOI: 10.1155/2019/5416728
Source DB: PubMed Journal: Oxid Med Cell Longev ISSN: 1942-0994 Impact factor: 6.543
Figure 1Homologous alignment and phylogenetic analysis of heme oxygenase and HO-like proteins. (a) Phylogenetic analysis of HO from different species. The amino acid sequences were downloaded from the NCBI website. Amino acid position is presented by a 0.2 bar. (b) Alignment of deduced HO proteins with other species.
Figure 2The mechanism of UVA-modulated HO-1 regulation through the PERK and Nrf2 signal pathway. U: ubiquitination; P: phosphorylation; ROS: reactive oxygen species; ARE: antioxidant response elements; CARE: C/EBP-ATF regulatory element; HO-1: heme oxygenase-1; ER: endoplasmic reticulum; Maf: small Maf protein; Bach1: transcription repressor; Nrf2: nuclear factor 2-related erythroid factor-2; CBP: CREB-binding protein.
The predication of HO-1 promoter region.
| Gene | Detail | Matrix name | Start | End | Ration | Strand | Sequence |
|---|---|---|---|---|---|---|---|
| AARE binding factors | ATF4 binding site | V$AARE.01 | 361 | 369 | 0.953 | (−) | gTTTCacca |
| AARE binding factors | ATF4 binding site | V$AARE.01 | 2098 | 2106 | 0.953 | (+) | gTTTCacca |
| Autoimmune regulatory element binding factor | Autoimmune regulator | V$AIRE.01 | 1834 | 1848 | 0.785 | (+) | ccTTATttatggggt |
| AP1, activating protein 1 | Basic leucine zipper transcription factor, ATF-like | V$BATF.01 | 807 | 819 | 0.977 | (−) | cattgaCTCAagg |
| AP1, activating protein 1 | Activator protein 1 | V$AP1.02 | 1208 | 1220 | 0.892 | (+) | atctGAGTgagcc |
| AP1, activating protein 1 | Transcription factor Jun B | V$JUNB.01 | 807 | 819 | 0.977 | (+) | ccttgaGTCAatg |
| MAF- and AP1-related factors | Heterodimers with small Maf proteins | V$MARE.03 | 669 | 693 | 0.92 | (+) | gctctgGCTGaatcatgaaagggga |
| MAF- and AP1-related factors | Bach2 bound TRE | V$BACH2.01 | 802 | 826 | 0.951 | (+) | catcccctTGAGtcaatgctgttat |
| MAF- and AP1-related factors | Leucine zipper protein NF-E2 (nuclear factor, erythroid-derived) | V$NFE2.02 | 2530 | 2554 | 0.805 | (+) | ggggctggcgaGTCActgacccgcc |
| MAF- and AP1-related factors | NF-E2 p45 | V$NFE2.01 | 2707 | 2731 | 1 | (+) | gattttgCTGAgtcaccagtgcctc |
| Activator protein 2 | Transcription factor AP-2, beta | V$TCFAP2B.01 | 1173 | 1187 | 0.891 | (−) | ggaGCCCctgggccc |
| Heterodimers between bZIP family members | Heterodimer of CEBP epsilon and ATF4 | V$CEBPE_ATF4.02 | 1678 | 1690 | 0.89 | (−) | aattatGCAAgct |
| Heterodimers between bZIP family members | Heterodimer of CEBP epsilon and ATF4 | V$CEBPE_ATF4.02 | 1960 | 1972 | 0.869 | (+) | agtggtGCAAtct |
| Heterodimers between bZIP family members | Heterodimer of CEBP epsilon and ATF4 | V$CEBPE_ATF4.02 | 2907 | 2919 | 0.883 | (+) | aatgttGCAAtcc |
| CCAAT binding factors | Nuclear factor Y (Y-box binding factor) | V$NFY.04 | 2192 | 2206 | 0.922 | (−) | tgggCCAAttgtggt |
| CCAAT binding factors | Nuclear factor Y (Y-box binding factor) | V$NFY.01 | 3692 | 3706 | 0.91 | (+) | ctttCCAAtgggggg |
| CCAAT binding factors | Nuclear factor Y (Y-box binding factor) | V$NFY.04 | 1663 | 1677 | 0.948 | (+) | tgatCCAAttagact |
| Calcium-response elements | Calcium-response factor | V$CARF.01 | 752 | 762 | 0.936 | (−) | acagtGAGGct |
| Calcium-response elements | Calcium-response factor | V$CARF.01 | 2437 | 2447 | 0.911 | (−) | agagtGAGGag |
| Cell cycle regulators: cell cycle-dependent element | Cell cycle-dependent element, CDF-1 binding site | V$CDE.01 | 2609 | 2621 | 0.937 | (+) | gagtCGCGatttc |
| C/EBP homologous protein (CHOP) | Heterodimers of CHOP and C/EBPalpha | V$CHOP.02 | 1978 | 1990 | 0.974 | (+) | cacTGCAacctcc |
| Cell cycle regulators: cell cycle homology element | CDE/CHR tandem elements regulate cell cycle-dependent repression | V$CHR.01 | 3922 | 3934 | 0.97 | (+) | tagtTTGAatcct |
| C/EBP homologous protein (CHOP) | Heterodimers of CHOP and C/EBPalpha | V$CHOP.01 | 2909 | 2921 | 0.923 | (+) | tgttGCAAtccac |
| cAMP-responsive element binding proteins | c-Jun/ATF2 heterodimers | V$CJUN_ATF2.01 | 1362 | 1382 | 0.998 | (+) | ccttgcTGACttcaaggagct |
| cAMP-responsive element binding proteins | Activating transcription factor 1 | V$ATF1.02 | 2643 | 2663 | 0.918 | (−) | caaacaTGACgcagcagaaat |
| cAMP-responsive element binding proteins | X-box-binding protein 1 | V$XBP1.01 | 6597 | 6617 | 0.93 | (−) | ggcgggtcACGTgggccaggc |
| CTCF and BORIS gene family | Insulator protein CTCF (CCCTC-binding factor) | V$CTCF.05 | 3782 | 3808 | 0.834 | (−) | attcagcgaccctAGAGggtaaaactc |
| E2F-myc activator/cell cycle regulator | E2F transcription factor 4, p107/p130-binding protein | V$E2F4.01 | 2542 | 2558 | 0.969 | (−) | gggggGCGGgtcagtga |
| Estrogen-related receptors | Estrogen-related receptor alpha | V$ESRRA.01 | 4197 | 4219 | 0.9 | (−) | aatagatgcttcAAGGtctcttt |
| Estrogen-related receptors | Estrogen-related receptor alpha, homodimer DR5 binding site | V$ESRRA.05 | 1331 | 1353 | 0.829 | (+) | taagggcataagAAGGtgaatct |
| Fork head domain factors | Alternative splicing variant of FOXP1, activated in ESCs | V$FOXP1_ES.01 | 1466 | 1482 | 1 | (−) | gctgtaaAACAgattct |
| Fork head domain factors | Hepatic nuclear factor 3 beta (FOXA2) | V$HNF3B.03 | 4490 | 4506 | 0.886 | (−) | cttttgTAAAgaagtgt |
| Glucocorticoid responsive and related elements | Progesterone receptor binding site, IR3 sites | V$pre.01 | 3545 | 3563 | 0.892 | (−) | caggccagagtTGTTctgg |
| Glucocorticoid responsive and related elements | Androgene receptor binding site, IR3 sites | V$are.02 | 5282 | 5300 | 0.903 | (+) | ggacagcgtcttGTTCtgt |
| Human acute myelogenous leukemia factors | Runt-related transcription factor 2/CBFA1 | V$AML3.01 | 2567 | 2581 | 0.91 | (−) | agaaGTGGtttgggc |
| Heat shock factors | Heat shock factor 2 | V$HSF2.02 | 195 | 219 | 0.961 | (−) | tttcaaatgtccAGAAaagtcgcaa |
| Heat shock factors | Heat shock factor 1 | V$HSF1.02 | 481 | 505 | 0.753 | (+) | tgcaatgagcCGAGatagtgccatt |
| Hypoxia-inducible factor, bHLH/PAS protein family | Hypoxia-inducible factor, bHLH/PAS protein family | V$HIF1.02 | 6599 | 6615 | 0.964 | (+) | ctggcccaCGTGacccg |
| Hypoxia-inducible factor, bHLH/PAS protein family | Aryl hydrocarbon receptor nuclear translocator-like, homodimer | V$ARNTL.01 | 6600 | 6616 | 1 | (−) | gcgggtcaCGTGggcca |
| Myc-associated zinc fingers | Myc-associated zinc finger protein (MAZ) | V$MAZ.01 | 2661 | 2673 | 0.951 | (+) | ttggGAGGgggga |
| Myc-associated zinc fingers | MYC-associated zinc finger transcription factor | V$MAZR.01 | 2663 | 2675 | 0.885 | (+) | gggaggGGGGact |
| Cellular and viral myb-like transcriptional regulators | v-Myb, AMV v-myb | V$VMYB.04 | 3596 | 3616 | 0.89 | (+) | gggctgttctAACGaagtctg |
| NGFI-B response elements | Nuclear hormone receptor NUR77 (NR4A1) | V$NUR77.01 | 5088 | 5102 | 0.93 | (−) | gacaaaaGTCAggtt |
| NeuroD, beta2, HLH domain | Neuronal differentiation 1 | V$NEUROD1.02 | 5648 | 5662 | 0.929 | (+) | gaatCATCtggtcca |
| Nuclear factor kappa B/c-rel | NF-kappaB (p50) | V$NFKAPPAB50.01 | 1629 | 1643 | 0.882 | (−) | gagGGGAttaccaag |
| Nuclear factor kappa B/c-rel | NF-kappaB | V$NFKAPPAB.01 | 2396 | 2410 | 0.944 | (−) | agGGGAcgtccccag |
| Nuclear factor kappa B/c-rel | NF-kappaB (p65) | V$NFKAPPAB65.01 | 4464 | 4478 | 0.992 | (+) | tctggaatTTCCtta |
| “Negative” glucocorticoid response elements | Repressive binding sites for glucocorticoid receptor (IR2) | V$IR2_NGRE.01 | 1182 | 1196 | 0.803 | (+) | ggCTCCtagggcagc |
| Nuclear receptor subfamily 2 factors | DR1 binding sites for TR2 homodimers or TR2/TR4 heterodimers | V$TR2_TR4.01 | 612 | 636 | 0.841 | (−) | tgcagtagggcgggGGTCactaaca |
| Nuclear receptor subfamily 2 factors | TR4 homodimer, DR1 site | V$TR4.02 | 2740 | 2764 | 0.782 | (+) | ctctttAGGTgggaggtgaaagggc |
| OVO homolog-like transcription factors | Zinc finger transcription factor OVO homolog-like 1 | V$OVOL1.01 | 3600 | 3614 | 0.836 | (−) | gacttcGTTAgaaca |
| p53 tumor suppressor | Tumor suppressor p53 | V$P53.08 | 399 | 423 | 0.889 | (+) | ctgggcatggtggtgCATGcctgta |
| p53 tumor suppressor | Tumor protein p63 | V$TP63.02 | 5402 | 5426 | 0.933 | (+) | acaggcatgtgccacCATGcccagc |
| Peroxisome proliferator-activated receptor | Peroxisome proliferator-activated receptor gamma, DR1 sites | V$PPARG.03 | 540 | 562 | 0.852 | (+) | tctaaaaaaaaaAAAGgtaaata |
| SOX/SRY-sex/testis | SRY-box containing gene 3 | V$SOX3.01 | 1765 | 1787 | 0.979 | (−) | aacagaCAAAagatgaacattcc |
| Sterol regulatory element binding proteins | Sterol regulatory element binding protein | V$SREBP.03 | 3083 | 3097 | 0.948 | (−) | tgaTCACctgaggtc |
| Signal transducer and activator of transcription | Signal transducer and activator of transcription 3 | V$STAT3.02 | 4259 | 4277 | 0.966 | (−) | ccagTTCCtggaatagtgc |
| Signal transducer and activator of transcription | STAT5: signal transducer and activator of transcription 5 | V$STAT5.01 | 5105 | 5123 | 0.927 | (−) | aaggTTCCccgaaaaccaa |
| Signal transducer and activator of transcription | STAT6: signal transducer and activator of transcription 6 | V$STAT6.01 | 5117 | 5135 | 0.92 | (−) | cttcTTCCtctgaaggttc |
| Signal transducer and activator of transcription | Signal transducer and activator of transcription 1 | V$STAT1.01 | 5810 | 5828 | 0.793 | (+) | aatgtgcctGGAAgagtgt |
| TGF-beta induced apoptosis proteins | Cysteine-serine-rich nuclear protein 1 | V$CSRNP1.01 | 2165 | 2171 | 1 | (+) | AGAGtgc |
| TCF11 transcription factor | TCF11/LCR-F1/Nrf1 homodimers | V$TCF11.01 | 3967 | 3973 | 1 | (−) | GTCAttt |
| Activator/repressor binding to transcription initiation site | Transcription factor yin yang 2 | V$YY2.01 | 3156 | 3178 | 0.981 | (+) | catcctCCATcttcaaagctagc |
| Activator/repressor binding to transcription initiation site | Transcription factor yin yang 2 | V$YY2.02 | 3794 | 3816 | 0.853 | (−) | gtctgtCCATtcagcgaccctag |
| Members of ZIC family, zinc finger protein of the cerebellum | Zinc finger protein of the cerebellum (Zic3) | V$ZIC3.03 | 2978 | 2992 | 0.918 | (+) | gcctcCAGCaggaga |