Literature DB >> 31803348

FULLY-AUTOMATIC SEGMENTATION OF KIDNEYS IN CLINICAL ULTRASOUND IMAGES USING A BOUNDARY DISTANCE REGRESSION NETWORK.

Shi Yin1,2, Zhengqiang Zhang1, Hongming Li2, Qinmu Peng1, Xinge You1, Susan L Furth3, Gregory E Tasian4,5,6, Yong Fan2.   

Abstract

It remains challenging to automatically segment kidneys in clinical ultrasound images due to the kidneys' varied shapes and image intensity distributions, although semi-automatic methods have achieved promising performance. In this study, we developed a novel boundary distance regression deep neural network to segment the kidneys, informed by the fact that the kidney boundaries are relatively consistent across images in terms of their appearance. Particularly, we first use deep neural networks pre-trained for classification of natural images to extract high-level image features from ultrasound images, then these feature maps are used as input to learn kidney boundary distance maps using a boundary distance regression network, and finally the predicted boundary distance maps are classified as kidney pixels or non-kidney pixels using a pixel classification network in an end-to-end learning fashion. Experimental results have demonstrated that our method could effectively improve the performance of automatic kidney segmentation, significantly better than deep learning based pixel classification networks.

Entities:  

Keywords:  Ultrasound imaging; boundary detection; deep learning; fully-automatic segmentation

Year:  2019        PMID: 31803348      PMCID: PMC6892163          DOI: 10.1109/ISBI.2019.8759170

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  12 in total

1.  Segmentation of kidney from ultrasound images based on texture and shape priors.

Authors:  Jun Xie; Yifeng Jiang; Hung-tat Tsui
Journal:  IEEE Trans Med Imaging       Date:  2005-01       Impact factor: 10.048

2.  DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFs.

Authors:  Liang-Chieh Chen; George Papandreou; Iasonas Kokkinos; Kevin Murphy; Alan L Yuille
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2017-04-27       Impact factor: 6.226

3.  Automatic analysis of pediatric renal ultrasound using shape, anatomical and image acquisition priors.

Authors:  Xin Kang; Nabile Safdar; Emmarie Myers; Aaron D Martin; Enrico Grisan; Craig A Peters; Marius George Linguraru
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

4.  Renal parenchymal area and risk of ESRD in boys with posterior urethral valves.

Authors:  Jose E Pulido; Susan L Furth; Stephen A Zderic; Douglas A Canning; Gregory E Tasian
Journal:  Clin J Am Soc Nephrol       Date:  2013-12-05       Impact factor: 8.237

5.  A Dynamic Graph Cuts Method with Integrated Multiple Feature Maps for Segmenting Kidneys in 2D Ultrasound Images.

Authors:  Qiang Zheng; Steven Warner; Gregory Tasian; Yong Fan
Journal:  Acad Radiol       Date:  2018-02-12       Impact factor: 3.173

6.  A deep learning model integrating FCNNs and CRFs for brain tumor segmentation.

Authors:  Xiaomei Zhao; Yihong Wu; Guidong Song; Zhenye Li; Yazhuo Zhang; Yong Fan
Journal:  Med Image Anal       Date:  2017-10-05       Impact factor: 8.545

7.  An approach for contour detection of human kidneys from ultrasound images using Markov random fields and active contours.

Authors:  Marcos Martín-Fernández; Carlos Alberola-López
Journal:  Med Image Anal       Date:  2005-02       Impact factor: 8.545

8.  TRANSFER LEARNING FOR DIAGNOSIS OF CONGENITAL ABNORMALITIES OF THE KIDNEY AND URINARY TRACT IN CHILDREN BASED ON ULTRASOUND IMAGING DATA.

Authors:  Qiang Zheng; Gregory Tasian; Yong Fan
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2018-05-24

9.  DeepMitosis: Mitosis detection via deep detection, verification and segmentation networks.

Authors:  Chao Li; Xinggang Wang; Wenyu Liu; Longin Jan Latecki
Journal:  Med Image Anal       Date:  2018-01-31       Impact factor: 8.545

10.  Automatic Segmentation of Kidneys using Deep Learning for Total Kidney Volume Quantification in Autosomal Dominant Polycystic Kidney Disease.

Authors:  Kanishka Sharma; Christian Rupprecht; Anna Caroli; Maria Carolina Aparicio; Andrea Remuzzi; Maximilian Baust; Nassir Navab
Journal:  Sci Rep       Date:  2017-05-17       Impact factor: 4.379

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  5 in total

1.  Automatic kidney segmentation in ultrasound images using subsequent boundary distance regression and pixelwise classification networks.

Authors:  Shi Yin; Qinmu Peng; Hongming Li; Zhengqiang Zhang; Xinge You; Katherine Fischer; Susan L Furth; Gregory E Tasian; Yong Fan
Journal:  Med Image Anal       Date:  2019-11-08       Impact factor: 8.545

2.  Deep Segmentation Networks for Segmenting Kidneys and Detecting Kidney Stones in Unenhanced Abdominal CT Images.

Authors:  Dan Li; Chuda Xiao; Yang Liu; Zhuo Chen; Haseeb Hassan; Liyilei Su; Jun Liu; Haoyu Li; Weiguo Xie; Wen Zhong; Bingding Huang
Journal:  Diagnostics (Basel)       Date:  2022-07-23

3.  Multi-instance Deep Learning with Graph Convolutional Neural Networks for Diagnosis of Kidney Diseases Using Ultrasound Imaging.

Authors:  Shi Yin; Qinmu Peng; Hongming Li; Zhengqiang Zhang; Xinge You; Hangfan Liu; Katherine Fischer; Susan L Furth; Gregory E Tasian; Yong Fan
Journal:  Uncertain Safe Util Machine Learn Med Imaging Clin Image Based Proced (2019)       Date:  2019-10-07

4.  Multi-instance Deep Learning of Ultrasound Imaging Data for Pattern Classification of Congenital Abnormalities of the Kidney and Urinary Tract in Children.

Authors:  Shi Yin; Qinmu Peng; Hongming Li; Zhengqiang Zhang; Xinge You; Katherine Fischer; Susan L Furth; Yong Fan; Gregory E Tasian
Journal:  Urology       Date:  2020-05-20       Impact factor: 2.649

5.  Current status of deep learning applications in abdominal ultrasonography.

Authors:  Kyoung Doo Song
Journal:  Ultrasonography       Date:  2020-09-02
  5 in total

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