Literature DB >> 35892498

Deep Segmentation Networks for Segmenting Kidneys and Detecting Kidney Stones in Unenhanced Abdominal CT Images.

Dan Li1,2, Chuda Xiao1, Yang Liu3, Zhuo Chen2, Haseeb Hassan1, Liyilei Su1, Jun Liu2, Haoyu Li1, Weiguo Xie2, Wen Zhong3, Bingding Huang1.   

Abstract

Recent breakthroughs of deep learning algorithms in medical imaging, automated detection, and segmentation techniques for renal (kidney) in abdominal computed tomography (CT) images have been limited. Radiomics and machine learning analyses of renal diseases rely on the automatic segmentation of kidneys in CT images. Inspired by this, our primary aim is to utilize deep semantic segmentation learning models with a proposed training scheme to achieve precise and accurate segmentation outcomes. Moreover, this work aims to provide the community with an open-source, unenhanced abdominal CT dataset for training and testing the deep learning segmentation networks to segment kidneys and detect kidney stones. Five variations of deep segmentation networks are trained and tested both dependently (based on the proposed training scheme) and independently. Upon comparison, the models trained with the proposed training scheme enable the highly accurate 2D and 3D segmentation of kidneys and kidney stones. We believe this work is a fundamental step toward AI-driven diagnostic strategies, which can be an essential component of personalized patient care and improved decision-making in treating kidney diseases.

Entities:  

Keywords:  computed tomography; kidney detection; kidney segmentation; kidney stone detection; kidney stone segmentation; semantic segmentation networks

Year:  2022        PMID: 35892498      PMCID: PMC9330428          DOI: 10.3390/diagnostics12081788

Source DB:  PubMed          Journal:  Diagnostics (Basel)        ISSN: 2075-4418


  35 in total

1.  3D kidney segmentation from CT images using a level set approach guided by a novel stochastic speed function.

Authors:  Fahmi Khalifa; Ahmed Elnakib; Garth M Beache; Georgy Gimel'farb; Mohamed Abo El-Ghar; Rosemary Ouseph; Guela Sokhadze; Samantha Manning; Patrick McClure; Ayman El-Baz
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

2.  Automated renal segmentation in healthy and chronic kidney disease subjects using a convolutional neural network.

Authors:  Alexander J Daniel; Charlotte E Buchanan; Thomas Allcock; Daniel Scerri; Eleanor F Cox; Benjamin L Prestwich; Susan T Francis
Journal:  Magn Reson Med       Date:  2021-03-23       Impact factor: 4.668

3.  Automated segmentation and volumetric analysis of renal cortex, medulla, and pelvis based on non-contrast-enhanced T1- and T2-weighted MR images.

Authors:  Susanne Will; Petros Martirosian; Christian Würslin; Fritz Schick
Journal:  MAGMA       Date:  2014-01-30       Impact factor: 2.310

4.  Urinary bladder segmentation in CT urography using deep-learning convolutional neural network and level sets.

Authors:  Kenny H Cha; Lubomir Hadjiiski; Ravi K Samala; Heang-Ping Chan; Elaine M Caoili; Richard H Cohan
Journal:  Med Phys       Date:  2016-04       Impact factor: 4.071

5.  Deep Semantic Segmentation of Kidney and Space-Occupying Lesion Area Based on SCNN and ResNet Models Combined with SIFT-Flow Algorithm.

Authors:  Kai-Jian Xia; Hong-Sheng Yin; Yu-Dong Zhang
Journal:  J Med Syst       Date:  2018-11-19       Impact factor: 4.460

6.  Machine-Learning-Based Electronic Triage More Accurately Differentiates Patients With Respect to Clinical Outcomes Compared With the Emergency Severity Index.

Authors:  Scott Levin; Matthew Toerper; Eric Hamrock; Jeremiah S Hinson; Sean Barnes; Heather Gardner; Andrea Dugas; Bob Linton; Tom Kirsch; Gabor Kelen
Journal:  Ann Emerg Med       Date:  2017-09-06       Impact factor: 5.721

7.  nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation.

Authors:  Fabian Isensee; Paul F Jaeger; Simon A A Kohl; Jens Petersen; Klaus H Maier-Hein
Journal:  Nat Methods       Date:  2020-12-07       Impact factor: 28.547

8.  Magnetic Resonance Imaging Radiomics Analyses for Prediction of High-Grade Histology and Necrosis in Clear Cell Renal Cell Carcinoma: Preliminary Experience.

Authors:  Durgesh K Dwivedi; Yin Xi; Payal Kapur; Ananth J Madhuranthakam; Matthew A Lewis; Durga Udayakumar; Robert Rasmussen; Qing Yuan; Aditya Bagrodia; Vitaly Margulis; Michael Fulkerson; James Brugarolas; Jeffrey A Cadeddu; Ivan Pedrosa
Journal:  Clin Genitourin Cancer       Date:  2020-05-23       Impact factor: 2.872

Review 9.  Deep Learning for Brain MRI Segmentation: State of the Art and Future Directions.

Authors:  Zeynettin Akkus; Alfiia Galimzianova; Assaf Hoogi; Daniel L Rubin; Bradley J Erickson
Journal:  J Digit Imaging       Date:  2017-08       Impact factor: 4.056

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