Literature DB >> 29455111

DeepMitosis: Mitosis detection via deep detection, verification and segmentation networks.

Chao Li1, Xinggang Wang2, Wenyu Liu3, Longin Jan Latecki4.   

Abstract

Mitotic count is a critical predictor of tumor aggressiveness in the breast cancer diagnosis. Nowadays mitosis counting is mainly performed by pathologists manually, which is extremely arduous and time-consuming. In this paper, we propose an accurate method for detecting the mitotic cells from histopathological slides using a novel multi-stage deep learning framework. Our method consists of a deep segmentation network for generating mitosis region when only a weak label is given (i.e., only the centroid pixel of mitosis is annotated), an elaborately designed deep detection network for localizing mitosis by using contextual region information, and a deep verification network for improving detection accuracy by removing false positives. We validate the proposed deep learning method on two widely used Mitosis Detection in Breast Cancer Histological Images (MITOSIS) datasets. Experimental results show that we can achieve the highest F-score on the MITOSIS dataset from ICPR 2012 grand challenge merely using the deep detection network. For the ICPR 2014 MITOSIS dataset that only provides the centroid location of mitosis, we employ the segmentation model to estimate the bounding box annotation for training the deep detection network. We also apply the verification model to eliminate some false positives produced from the detection model. By fusing scores of the detection and verification models, we achieve the state-of-the-art results. Moreover, our method is very fast with GPU computing, which makes it feasible for clinical practice.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Breast cancer grading; Faster R-CNN; Fully convolutional network; Mitosis detection

Mesh:

Year:  2018        PMID: 29455111     DOI: 10.1016/j.media.2017.12.002

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  18 in total

1.  FULLY-AUTOMATIC SEGMENTATION OF KIDNEYS IN CLINICAL ULTRASOUND IMAGES USING A BOUNDARY DISTANCE REGRESSION NETWORK.

Authors:  Shi Yin; Zhengqiang Zhang; Hongming Li; Qinmu Peng; Xinge You; Susan L Furth; Gregory E Tasian; Yong Fan
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2019-07-11

2.  Machine learning techniques for mitoses classification.

Authors:  Shima Nofallah; Sachin Mehta; Ezgi Mercan; Stevan Knezevich; Caitlin J May; Donald Weaver; Daniela Witten; Joann G Elmore; Linda Shapiro
Journal:  Comput Med Imaging Graph       Date:  2020-11-27       Impact factor: 4.790

3.  Effects of Image Quantity and Image Source Variation on Machine Learning Histology Differential Diagnosis Models.

Authors:  Elham Vali-Betts; Kevin J Krause; Alanna Dubrovsky; Kristin Olson; John Paul Graff; Anupam Mitra; Ananya Datta-Mitra; Kenneth Beck; Aristotelis Tsirigos; Cynthia Loomis; Antonio Galvao Neto; Esther Adler; Hooman H Rashidi
Journal:  J Pathol Inform       Date:  2021-01-23

4.  Accuracy and efficiency of an artificial intelligence tool when counting breast mitoses.

Authors:  Liron Pantanowitz; Douglas Hartman; Yan Qi; Eun Yoon Cho; Beomseok Suh; Kyunghyun Paeng; Rajiv Dhir; Pamela Michelow; Scott Hazelhurst; Sang Yong Song; Soo Youn Cho
Journal:  Diagn Pathol       Date:  2020-07-04       Impact factor: 2.644

5.  Artificial Intelligence-Based Mitosis Detection in Breast Cancer Histopathology Images Using Faster R-CNN and Deep CNNs.

Authors:  Tahir Mahmood; Muhammad Arsalan; Muhammad Owais; Min Beom Lee; Kang Ryoung Park
Journal:  J Clin Med       Date:  2020-03-10       Impact factor: 4.241

6.  Automated quantitative analysis of Ki-67 staining and HE images recognition and registration based on whole tissue sections in breast carcinoma.

Authors:  Min Feng; Yang Deng; Libo Yang; Qiuyang Jing; Zhang Zhang; Lian Xu; Xiaoxia Wei; Yanyan Zhou; Diwei Wu; Fei Xiang; Yizhe Wang; Ji Bao; Hong Bu
Journal:  Diagn Pathol       Date:  2020-05-29       Impact factor: 2.644

7.  Hybrid AI-assistive diagnostic model permits rapid TBS classification of cervical liquid-based thin-layer cell smears.

Authors:  Xiaohui Zhu; Xiaoming Li; Kokhaur Ong; Wenli Zhang; Wencai Li; Longjie Li; David Young; Yongjian Su; Bin Shang; Linggan Peng; Wei Xiong; Yunke Liu; Wenting Liao; Jingjing Xu; Feifei Wang; Qing Liao; Shengnan Li; Minmin Liao; Yu Li; Linshang Rao; Jinquan Lin; Jianyuan Shi; Zejun You; Wenlong Zhong; Xinrong Liang; Hao Han; Yan Zhang; Na Tang; Aixia Hu; Hongyi Gao; Zhiqiang Cheng; Li Liang; Weimiao Yu; Yanqing Ding
Journal:  Nat Commun       Date:  2021-06-10       Impact factor: 14.919

8.  A Novel Digital Score for Abundance of Tumour Infiltrating Lymphocytes Predicts Disease Free Survival in Oral Squamous Cell Carcinoma.

Authors:  Muhammad Shaban; Syed Ali Khurram; Muhammad Moazam Fraz; Najah Alsubaie; Iqra Masood; Sajid Mushtaq; Mariam Hassan; Asif Loya; Nasir M Rajpoot
Journal:  Sci Rep       Date:  2019-09-16       Impact factor: 4.379

9.  A large-scale dataset for mitotic figure assessment on whole slide images of canine cutaneous mast cell tumor.

Authors:  Christof A Bertram; Marc Aubreville; Christian Marzahl; Andreas Maier; Robert Klopfleisch
Journal:  Sci Data       Date:  2019-11-21       Impact factor: 6.444

10.  A completely annotated whole slide image dataset of canine breast cancer to aid human breast cancer research.

Authors:  Marc Aubreville; Christof A Bertram; Taryn A Donovan; Christian Marzahl; Andreas Maier; Robert Klopfleisch
Journal:  Sci Data       Date:  2020-11-27       Impact factor: 6.444

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