Literature DB >> 31773462

COSMO-RS based predictions for the SAMPL6 logP challenge.

Christoph Loschen1, Jens Reinisch2, Andreas Klamt2,3.   

Abstract

Within the framework of the 6th physical property blind challenge (SAMPL6) the authors have participated in predicting the octanol-water partition coefficients (logP) for several small drug like molecules. Those logP values where experimentally known by the organizers but only revealed after the submissions of the predictions. Two different sets of predictions were submitted by the authors, both based on the COSMOtherm implementation of COSMO-RS theory. COSMOtherm predictions using the FINE parametrization level (hmz0n) obtained the highest accuracy among all submissions as measured by the root mean squared error. COSMOquick predictions using a fast algorithm to estimate σ-profiles and an a posterio machine learning correction on top of the COSMOtherm results (3vqbi) scored 3rd out of 91 submissions. Both results underline the high quality of COSMO-RS derived molecular free energies in solution.

Entities:  

Keywords:  COSMO-RS; COSMOquick; COSMOtherm; Liquid phase thermodynamics; Machine learning; Octanol–water partition coefficients; logP

Mesh:

Substances:

Year:  2019        PMID: 31773462     DOI: 10.1007/s10822-019-00259-z

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  12 in total

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Authors:  Dmitrij Rappoport; Filipp Furche
Journal:  J Chem Phys       Date:  2010-10-07       Impact factor: 3.488

2.  Predicting small-molecule solvation free energies: an informal blind test for computational chemistry.

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Journal:  J Med Chem       Date:  2008-01-24       Impact factor: 7.446

Review 3.  Calculation of molecular lipophilicity: State-of-the-art and comparison of log P methods on more than 96,000 compounds.

Authors:  Raimund Mannhold; Gennadiy I Poda; Claude Ostermann; Igor V Tetko
Journal:  J Pharm Sci       Date:  2009-03       Impact factor: 3.534

4.  Density-functional approximation for the correlation energy of the inhomogeneous electron gas.

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Journal:  Phys Rev B Condens Matter       Date:  1986-06-15

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Journal:  Phys Rev A Gen Phys       Date:  1988-09-15

6.  High accuracy quantum-chemistry-based calculation and blind prediction of macroscopic pKa values in the context of the SAMPL6 challenge.

Authors:  Philipp Pracht; Rainer Wilcken; Anikó Udvarhelyi; Stephane Rodde; Stefan Grimme
Journal:  J Comput Aided Mol Des       Date:  2018-08-23       Impact factor: 3.686

7.  Prediction of cyclohexane-water distribution coefficients with COSMO-RS on the SAMPL5 data set.

Authors:  Andreas Klamt; Frank Eckert; Jens Reinisch; Karin Wichmann
Journal:  J Comput Aided Mol Des       Date:  2016-07-26       Impact factor: 3.686

8.  pH-metric log P. 4. Comparison of partition coefficients determined by HPLC and potentiometric methods to literature values.

Authors:  B Slater; A McCormack; A Avdeef; J E Comer
Journal:  J Pharm Sci       Date:  1994-09       Impact factor: 3.534

9.  Measuring experimental cyclohexane-water distribution coefficients for the SAMPL5 challenge.

Authors:  Ariën S Rustenburg; Justin Dancer; Baiwei Lin; Jianwen A Feng; Daniel F Ortwine; David L Mobley; John D Chodera
Journal:  J Comput Aided Mol Des       Date:  2016-10-07       Impact factor: 3.686

10.  pH-metric log P. II: Refinement of partition coefficients and ionization constants of multiprotic substances.

Authors:  A Avdeef
Journal:  J Pharm Sci       Date:  1993-02       Impact factor: 3.534

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  8 in total

1.  Assessing the accuracy of octanol-water partition coefficient predictions in the SAMPL6 Part II log P Challenge.

Authors:  Mehtap Işık; Teresa Danielle Bergazin; Thomas Fox; Andrea Rizzi; John D Chodera; David L Mobley
Journal:  J Comput Aided Mol Des       Date:  2020-02-27       Impact factor: 3.686

2.  Measurement and Prediction of Isothermal Vapor-Liquid Equilibrium and Thermodynamic Properties of a Turpentine + Rosin System Using the COSMO-RS Model.

Authors:  Youqi Li; Xiaopeng Chen; Linlin Wang; Xiaojie Wei; Minting Nong; Weijian Nong; Jiezhen Liang
Journal:  ACS Omega       Date:  2022-05-04

3.  ReSCoSS: a flexible quantum chemistry workflow identifying relevant solution conformers of drug-like molecules.

Authors:  Anikó Udvarhelyi; Stephane Rodde; Rainer Wilcken
Journal:  J Comput Aided Mol Des       Date:  2020-08-17       Impact factor: 3.686

4.  COSMO-RS predictions of logP in the SAMPL7 blind challenge.

Authors:  Judith Warnau; Karin Wichmann; Jens Reinisch
Journal:  J Comput Aided Mol Des       Date:  2021-06-14       Impact factor: 3.686

5.  Alkane/Water Partition Coefficient Calculation Based on the Modified AM1 Method and Internal Hydrogen Bonding Sampling Using COSMO-RS.

Authors:  Panagiotis C Petris; Paul Becherer; Johannes G E M Fraaije
Journal:  J Chem Inf Model       Date:  2021-06-24       Impact factor: 4.956

6.  Evaluation of log P, pKa, and log D predictions from the SAMPL7 blind challenge.

Authors:  Teresa Danielle Bergazin; Nicolas Tielker; Yingying Zhang; Junjun Mao; M R Gunner; Karol Francisco; Carlo Ballatore; Stefan M Kast; David L Mobley
Journal:  J Comput Aided Mol Des       Date:  2021-06-24       Impact factor: 3.686

7.  Energy-entropy prediction of octanol-water logP of SAMPL7 N-acyl sulfonamide bioisosters.

Authors:  Fabio Falcioni; Jas Kalayan; Richard H Henchman
Journal:  J Comput Aided Mol Des       Date:  2021-07-10       Impact factor: 3.686

8.  Multitask machine learning models for predicting lipophilicity (logP) in the SAMPL7 challenge.

Authors:  Eelke B Lenselink; Pieter F W Stouten
Journal:  J Comput Aided Mol Des       Date:  2021-07-17       Impact factor: 3.686

  8 in total

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