Literature DB >> 32803515

ReSCoSS: a flexible quantum chemistry workflow identifying relevant solution conformers of drug-like molecules.

Anikó Udvarhelyi1, Stephane Rodde2, Rainer Wilcken3.   

Abstract

Conformational equilibria are at the heart of drug design, yet their energetic description is often hampered by the insufficient accuracy of low-cost methods. Here we present a flexible and semi-automatic workflow based on quantum chemistry, ReSCoSS, designed to identify relevant conformers and predict their equilibria across different solvent environments in the Conductor-like Screening Model for Real Solvents (COSMO-RS) framework. We demonstrate the utility and accuracy of the workflow through conformational case studies on several drug-like molecules from literature where relevant conformations are known. We further show that including ReSCoSS conformers significantly improves COSMO-RS based predictions of physicochemical properties over single-conformation approaches. ReSCoSS has found broad adoption in the in-house drug discovery and development work streams and has contributed to establishing quantum-chemistry methods as a strategic pillar in ligand discovery.

Entities:  

Keywords:  COSMO-RS; Conformations; GFN-xTB; Quantum chemistry; ReSCoSS; logP

Mesh:

Substances:

Year:  2020        PMID: 32803515     DOI: 10.1007/s10822-020-00337-7

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  33 in total

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Journal:  J Comput Aided Mol Des       Date:  2001-12       Impact factor: 3.686

3.  Comprehensive Benchmark of Association (Free) Energies of Realistic Host-Guest Complexes.

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4.  A Real-World Perspective on Molecular Design.

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Journal:  J Med Chem       Date:  2016-02-24       Impact factor: 7.446

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Authors:  Aurora J Cruz-Cabeza; Joel Bernstein
Journal:  Chem Rev       Date:  2013-12-18       Impact factor: 60.622

Review 6.  Conformation Generation: The State of the Art.

Authors:  Paul C D Hawkins
Journal:  J Chem Inf Model       Date:  2017-07-31       Impact factor: 4.956

7.  High-Quality Dataset of Protein-Bound Ligand Conformations and Its Application to Benchmarking Conformer Ensemble Generators.

Authors:  Nils-Ole Friedrich; Agnes Meyder; Christina de Bruyn Kops; Kai Sommer; Florian Flachsenberg; Matthias Rarey; Johannes Kirchmair
Journal:  J Chem Inf Model       Date:  2017-02-16       Impact factor: 4.956

8.  Benchmarking Commercial Conformer Ensemble Generators.

Authors:  Nils-Ole Friedrich; Christina de Bruyn Kops; Florian Flachsenberg; Kai Sommer; Matthias Rarey; Johannes Kirchmair
Journal:  J Chem Inf Model       Date:  2017-10-18       Impact factor: 4.956

9.  Reliable and Performant Identification of Low-Energy Conformers in the Gas Phase and Water.

Authors:  Anna Theresa Cavasin; Alexander Hillisch; Felix Uellendahl; Sebastian Schneckener; Andreas H Göller
Journal:  J Chem Inf Model       Date:  2018-05-16       Impact factor: 4.956

10.  Searching for bioactive conformations of drug-like ligands with current force fields: how good are we?

Authors:  Oya Gürsoy; Martin Smieško
Journal:  J Cheminform       Date:  2017-05-15       Impact factor: 5.514

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  1 in total

1.  Relating Conformational Equilibria to Conformer-Specific Lipophilicities: New Opportunities in Drug Discovery.

Authors:  Bruno Linclau; Zhong Wang; Benjamin Jeffries; Jérôme Graton; Rodrigo J Carbajo; Davy Sinnaeve; Jean-Yves Le Questel; James S Scott; Elisabetta Chiarparin
Journal:  Angew Chem Int Ed Engl       Date:  2021-12-29       Impact factor: 16.823

  1 in total

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