Literature DB >> 31768050

Exome sequencing in amyotrophic lateral sclerosis implicates a novel gene, DNAJC7, encoding a heat-shock protein.

Sali M K Farhan1,2,3, Daniel P Howrigan4,5,6, Liam E Abbott4,5,6, Joseph R Klim7, Simon D Topp8, Andrea E Byrnes4,5,6, Claire Churchhouse4,5,6, Hemali Phatnani9, Bradley N Smith8, Evadnie Rampersaud10, Gang Wu10, Joanne Wuu11, Aleksey Shatunov12, Alfredo Iacoangeli12,13, Ahmad Al Khleifat12, Daniel A Mordes7, Sulagna Ghosh6,7, Kevin Eggan6,7, Rosa Rademakers14, Jacob L McCauley15,16, Rebecca Schüle17, Stephan Züchner15,16, Michael Benatar11, J Paul Taylor18,19, Michael Nalls20,21, Marc Gotkine22, Pamela J Shaw23, Karen E Morrison24, Ammar Al-Chalabi12,25, Bryan Traynor20,26, Christopher E Shaw8,27, David B Goldstein28, Matthew B Harms29, Mark J Daly4,5,6, Benjamin M Neale30,31,32.   

Abstract

To discover novel genes underlying amyotrophic lateral sclerosis (ALS), we aggregated exomes from 3,864 cases and 7,839 ancestry-matched controls. We observed a significant excess of rare protein-truncating variants among ALS cases, and these variants were concentrated in constrained genes. Through gene level analyses, we replicated known ALS genes including SOD1, NEK1 and FUS. We also observed multiple distinct protein-truncating variants in a highly constrained gene, DNAJC7. The signal in DNAJC7 exceeded genome-wide significance, and immunoblotting assays showed depletion of DNAJC7 protein in fibroblasts in a patient with ALS carrying the p.Arg156Ter variant. DNAJC7 encodes a member of the heat-shock protein family, HSP40, which, along with HSP70 proteins, facilitates protein homeostasis, including folding of newly synthesized polypeptides and clearance of degraded proteins. When these processes are not regulated, misfolding and accumulation of aberrant proteins can occur and lead to protein aggregation, which is a pathological hallmark of neurodegeneration. Our results highlight DNAJC7 as a novel gene for ALS.

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Year:  2019        PMID: 31768050      PMCID: PMC6919277          DOI: 10.1038/s41593-019-0530-0

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   28.771


  56 in total

1.  The path to personalized medicine.

Authors:  Margaret A Hamburg; Francis S Collins
Journal:  N Engl J Med       Date:  2010-06-15       Impact factor: 91.245

2.  The support of human genetic evidence for approved drug indications.

Authors:  Matthew R Nelson; Hannah Tipney; Jeffery L Painter; Judong Shen; Paola Nicoletti; Yufeng Shen; Aris Floratos; Pak Chung Sham; Mulin Jun Li; Junwen Wang; Lon R Cardon; John C Whittaker; Philippe Sanseau
Journal:  Nat Genet       Date:  2015-06-29       Impact factor: 38.330

Review 3.  Gene discovery in amyotrophic lateral sclerosis: implications for clinical management.

Authors:  Ammar Al-Chalabi; Leonard H van den Berg; Jan Veldink
Journal:  Nat Rev Neurol       Date:  2016-12-16       Impact factor: 42.937

4.  Perspective: Don't keep it in the family.

Authors:  Ammar Al-Chalabi
Journal:  Nature       Date:  2017-10-18       Impact factor: 49.962

5.  [Clinical use of cyclocarbothiamine (CCT) for neurogenic bladder dysfunction].

Authors:  H Nihira; M Kuze; T Kashiwagi; J Okita; K Tajiri
Journal:  Hinyokika Kiyo       Date:  1966-08

Review 6.  Amyotrophic lateral sclerosis - frontotemporal spectrum disorder (ALS-FTSD): Revised diagnostic criteria.

Authors:  Michael J Strong; Sharon Abrahams; Laura H Goldstein; Susan Woolley; Paula Mclaughlin; Julie Snowden; Eneida Mioshi; Angie Roberts-South; Michael Benatar; Tibor HortobáGyi; Jeffrey Rosenfeld; Vincenzo Silani; Paul G Ince; Martin R Turner
Journal:  Amyotroph Lateral Scler Frontotemporal Degener       Date:  2017-01-05       Impact factor: 4.092

7.  A Low-Frequency Inactivating AKT2 Variant Enriched in the Finnish Population Is Associated With Fasting Insulin Levels and Type 2 Diabetes Risk.

Authors:  Alisa Manning; Heather M Highland; Jessica Gasser; Xueling Sim; Taru Tukiainen; Pierre Fontanillas; Niels Grarup; Manuel A Rivas; Anubha Mahajan; Adam E Locke; Pablo Cingolani; Tune H Pers; Ana Viñuela; Andrew A Brown; Ying Wu; Jason Flannick; Christian Fuchsberger; Eric R Gamazon; Kyle J Gaulton; Hae Kyung Im; Tanya M Teslovich; Thomas W Blackwell; Jette Bork-Jensen; Noël P Burtt; Yuhui Chen; Todd Green; Christopher Hartl; Hyun Min Kang; Ashish Kumar; Claes Ladenvall; Clement Ma; Loukas Moutsianas; Richard D Pearson; John R B Perry; N William Rayner; Neil R Robertson; Laura J Scott; Martijn van de Bunt; Johan G Eriksson; Antti Jula; Seppo Koskinen; Terho Lehtimäki; Aarno Palotie; Olli T Raitakari; Suzanne B R Jacobs; Jennifer Wessel; Audrey Y Chu; Robert A Scott; Mark O Goodarzi; Christine Blancher; Gemma Buck; David Buck; Peter S Chines; Stacey Gabriel; Anette P Gjesing; Christopher J Groves; Mette Hollensted; Jeroen R Huyghe; Anne U Jackson; Goo Jun; Johanne Marie Justesen; Massimo Mangino; Jacquelyn Murphy; Matt Neville; Robert Onofrio; Kerrin S Small; Heather M Stringham; Joseph Trakalo; Eric Banks; Jason Carey; Mauricio O Carneiro; Mark DePristo; Yossi Farjoun; Timothy Fennell; Jacqueline I Goldstein; George Grant; Martin Hrabé de Angelis; Jared Maguire; Benjamin M Neale; Ryan Poplin; Shaun Purcell; Thomas Schwarzmayr; Khalid Shakir; Joshua D Smith; Tim M Strom; Thomas Wieland; Jaana Lindstrom; Ivan Brandslund; Cramer Christensen; Gabriela L Surdulescu; Timo A Lakka; Alex S F Doney; Peter Nilsson; Nicholas J Wareham; Claudia Langenberg; Tibor V Varga; Paul W Franks; Olov Rolandsson; Anders H Rosengren; Vidya S Farook; Farook Thameem; Sobha Puppala; Satish Kumar; Donna M Lehman; Christopher P Jenkinson; Joanne E Curran; Daniel Esten Hale; Sharon P Fowler; Rector Arya; Ralph A DeFronzo; Hanna E Abboud; Ann-Christine Syvänen; Pamela J Hicks; Nicholette D Palmer; Maggie C Y Ng; Donald W Bowden; Barry I Freedman; Tõnu Esko; Reedik Mägi; Lili Milani; Evelin Mihailov; Andres Metspalu; Narisu Narisu; Leena Kinnunen; Lori L Bonnycastle; Amy Swift; Dorota Pasko; Andrew R Wood; João Fadista; Toni I Pollin; Nir Barzilai; Gil Atzmon; Benjamin Glaser; Barbara Thorand; Konstantin Strauch; Annette Peters; Michael Roden; Martina Müller-Nurasyid; Liming Liang; Jennifer Kriebel; Thomas Illig; Harald Grallert; Christian Gieger; Christa Meisinger; Lars Lannfelt; Solomon K Musani; Michael Griswold; Herman A Taylor; Gregory Wilson; Adolfo Correa; Heikki Oksa; William R Scott; Uzma Afzal; Sian-Tsung Tan; Marie Loh; John C Chambers; Jobanpreet Sehmi; Jaspal Singh Kooner; Benjamin Lehne; Yoon Shin Cho; Jong-Young Lee; Bok-Ghee Han; Annemari Käräjämäki; Qibin Qi; Lu Qi; Jinyan Huang; Frank B Hu; Olle Melander; Marju Orho-Melander; Jennifer E Below; David Aguilar; Tien Yin Wong; Jianjun Liu; Chiea-Chuen Khor; Kee Seng Chia; Wei Yen Lim; Ching-Yu Cheng; Edmund Chan; E Shyong Tai; Tin Aung; Allan Linneberg; Bo Isomaa; Thomas Meitinger; Tiinamaija Tuomi; Liisa Hakaste; Jasmina Kravic; Marit E Jørgensen; Torsten Lauritzen; Panos Deloukas; Kathleen E Stirrups; Katharine R Owen; Andrew J Farmer; Timothy M Frayling; Stephen P O'Rahilly; Mark Walker; Jonathan C Levy; Dylan Hodgkiss; Andrew T Hattersley; Teemu Kuulasmaa; Alena Stančáková; Inês Barroso; Dwaipayan Bharadwaj; Juliana Chan; Giriraj R Chandak; Mark J Daly; Peter J Donnelly; Shah B Ebrahim; Paul Elliott; Tasha Fingerlin; Philippe Froguel; Cheng Hu; Weiping Jia; Ronald C W Ma; Gilean McVean; Taesung Park; Dorairaj Prabhakaran; Manjinder Sandhu; James Scott; Rob Sladek; Nikhil Tandon; Yik Ying Teo; Eleftheria Zeggini; Richard M Watanabe; Heikki A Koistinen; Y Antero Kesaniemi; Matti Uusitupa; Timothy D Spector; Veikko Salomaa; Rainer Rauramaa; Colin N A Palmer; Inga Prokopenko; Andrew D Morris; Richard N Bergman; Francis S Collins; Lars Lind; Erik Ingelsson; Jaakko Tuomilehto; Fredrik Karpe; Leif Groop; Torben Jørgensen; Torben Hansen; Oluf Pedersen; Johanna Kuusisto; Gonçalo Abecasis; Graeme I Bell; John Blangero; Nancy J Cox; Ravindranath Duggirala; Mark Seielstad; James G Wilson; Josee Dupuis; Samuli Ripatti; Craig L Hanis; Jose C Florez; Karen L Mohlke; James B Meigs; Markku Laakso; Andrew P Morris; Michael Boehnke; David Altshuler; Mark I McCarthy; Anna L Gloyn; Cecilia M Lindgren
Journal:  Diabetes       Date:  2017-03-24       Impact factor: 9.461

8.  Exome sequencing in amyotrophic lateral sclerosis identifies risk genes and pathways.

Authors:  Elizabeth T Cirulli; Brittany N Lasseigne; Slavé Petrovski; Peter C Sapp; Patrick A Dion; Claire S Leblond; Julien Couthouis; Yi-Fan Lu; Quanli Wang; Brian J Krueger; Zhong Ren; Jonathan Keebler; Yujun Han; Shawn E Levy; Braden E Boone; Jack R Wimbish; Lindsay L Waite; Angela L Jones; John P Carulli; Aaron G Day-Williams; John F Staropoli; Winnie W Xin; Alessandra Chesi; Alya R Raphael; Diane McKenna-Yasek; Janet Cady; J M B Vianney de Jong; Kevin P Kenna; Bradley N Smith; Simon Topp; Jack Miller; Athina Gkazi; Ammar Al-Chalabi; Leonard H van den Berg; Jan Veldink; Vincenzo Silani; Nicola Ticozzi; Christopher E Shaw; Robert H Baloh; Stanley Appel; Ericka Simpson; Clotilde Lagier-Tourenne; Stefan M Pulst; Summer Gibson; John Q Trojanowski; Lauren Elman; Leo McCluskey; Murray Grossman; Neil A Shneider; Wendy K Chung; John M Ravits; Jonathan D Glass; Katherine B Sims; Vivianna M Van Deerlin; Tom Maniatis; Sebastian D Hayes; Alban Ordureau; Sharan Swarup; John Landers; Frank Baas; Andrew S Allen; Richard S Bedlack; J Wade Harper; Aaron D Gitler; Guy A Rouleau; Robert Brown; Matthew B Harms; Gregory M Cooper; Tim Harris; Richard M Myers; David B Goldstein
Journal:  Science       Date:  2015-02-19       Impact factor: 47.728

9.  Exome-wide rare variant analysis identifies TUBA4A mutations associated with familial ALS.

Authors:  Bradley N Smith; Nicola Ticozzi; Claudia Fallini; Athina Soragia Gkazi; Simon Topp; Kevin P Kenna; Emma L Scotter; Jason Kost; Pamela Keagle; Jack W Miller; Daniela Calini; Caroline Vance; Eric W Danielson; Claire Troakes; Cinzia Tiloca; Safa Al-Sarraj; Elizabeth A Lewis; Andrew King; Claudia Colombrita; Viviana Pensato; Barbara Castellotti; Jacqueline de Belleroche; Frank Baas; Anneloor L M A ten Asbroek; Peter C Sapp; Diane McKenna-Yasek; Russell L McLaughlin; Meraida Polak; Seneshaw Asress; Jesús Esteban-Pérez; José Luis Muñoz-Blanco; Michael Simpson; Wouter van Rheenen; Frank P Diekstra; Giuseppe Lauria; Stefano Duga; Stefania Corti; Cristina Cereda; Lucia Corrado; Gianni Sorarù; Karen E Morrison; Kelly L Williams; Garth A Nicholson; Ian P Blair; Patrick A Dion; Claire S Leblond; Guy A Rouleau; Orla Hardiman; Jan H Veldink; Leonard H van den Berg; Ammar Al-Chalabi; Hardev Pall; Pamela J Shaw; Martin R Turner; Kevin Talbot; Franco Taroni; Alberto García-Redondo; Zheyang Wu; Jonathan D Glass; Cinzia Gellera; Antonia Ratti; Robert H Brown; Vincenzo Silani; Christopher E Shaw; John E Landers
Journal:  Neuron       Date:  2014-10-22       Impact factor: 17.173

10.  Rare loss-of-function variants in SETD1A are associated with schizophrenia and developmental disorders.

Authors:  Tarjinder Singh; Mitja I Kurki; David Curtis; Shaun M Purcell; Lucy Crooks; Jeremy McRae; Jaana Suvisaari; Himanshu Chheda; Douglas Blackwood; Gerome Breen; Olli Pietiläinen; Sebastian S Gerety; Muhammad Ayub; Moira Blyth; Trevor Cole; David Collier; Eve L Coomber; Nick Craddock; Mark J Daly; John Danesh; Marta DiForti; Alison Foster; Nelson B Freimer; Daniel Geschwind; Mandy Johnstone; Shelagh Joss; Georg Kirov; Jarmo Körkkö; Outi Kuismin; Peter Holmans; Christina M Hultman; Conrad Iyegbe; Jouko Lönnqvist; Minna Männikkö; Steve A McCarroll; Peter McGuffin; Andrew M McIntosh; Andrew McQuillin; Jukka S Moilanen; Carmel Moore; Robin M Murray; Ruth Newbury-Ecob; Willem Ouwehand; Tiina Paunio; Elena Prigmore; Elliott Rees; David Roberts; Jennifer Sambrook; Pamela Sklar; David St Clair; Juha Veijola; James T R Walters; Hywel Williams; Patrick F Sullivan; Matthew E Hurles; Michael C O'Donovan; Aarno Palotie; Michael J Owen; Jeffrey C Barrett
Journal:  Nat Neurosci       Date:  2016-03-14       Impact factor: 24.884

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  33 in total

1.  Hsp40 proteins phase separate to chaperone the assembly and maintenance of membraneless organelles.

Authors:  Jinge Gu; Zhenying Liu; Shengnan Zhang; Yichen Li; Wencheng Xia; Chen Wang; Huaijiang Xiang; Zhijun Liu; Li Tan; Yanshan Fang; Cong Liu; Dan Li
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-23       Impact factor: 11.205

2.  Hsp70 Inhibits the Replication of Fowl Adenovirus Serotype 4 by Suppressing Viral Hexon with the Assistance of DnaJC7.

Authors:  Jie Cao; Shuhui Liu; Meng Liu; Shuaiwen Wang; Zhenwei Bi; Wentao Fan; Zhiyu Shi; Suquan Song; Liping Yan
Journal:  J Virol       Date:  2022-07-19       Impact factor: 6.549

Review 3.  Recent Updates on the Genetics of Amyotrophic Lateral Sclerosis and Frontotemporal Dementia.

Authors:  Laxmi Kirola; Ashim Mukherjee; Mousumi Mutsuddi
Journal:  Mol Neurobiol       Date:  2022-06-30       Impact factor: 5.682

4.  Genetic Analysis of HSP40/DNAJ Family Genes in Parkinson's Disease: a Large Case-Control Study.

Authors:  Kailin Zhang; Hongxu Pan; Yuwen Zhao; Yige Wang; Qian Zeng; Xun Zhou; Runcheng He; Xiaoxia Zhou; Yaqin Xiang; Zhou Zhou; Yu Li; Qian Xu; Qiying Sun; Jieqiong Tan; Xinxiang Yan; Jinchen Li; Jifeng Guo; Beisha Tang; Zhenhua Liu
Journal:  Mol Neurobiol       Date:  2022-06-17       Impact factor: 5.682

5.  Heat-shock chaperone HSPB1 regulates cytoplasmic TDP-43 phase separation and liquid-to-gel transition.

Authors:  Shan Lu; Jiaojiao Hu; Olubankole Aladesuyi Arogundade; Alexander Goginashvili; Sonia Vazquez-Sanchez; Jolene K Diedrich; Jinge Gu; Jacob Blum; Spencer Oung; Qiaozhen Ye; Haiyang Yu; John Ravits; Cong Liu; John R Yates; Don W Cleveland
Journal:  Nat Cell Biol       Date:  2022-09-08       Impact factor: 28.213

6.  Association of Rare CYP39A1 Variants With Exfoliation Syndrome Involving the Anterior Chamber of the Eye.

Authors:  Zheng Li; Zhenxun Wang; Mei Chin Lee; Matthias Zenkel; Esther Peh; Mineo Ozaki; Fotis Topouzis; Satoko Nakano; Anita Chan; Shuwen Chen; Susan E I Williams; Andrew Orr; Masakazu Nakano; Nino Kobakhidze; Tomasz Zarnowski; Alina Popa-Cherecheanu; Takanori Mizoguchi; Shin-Ichi Manabe; Ken Hayashi; Shigeyasu Kazama; Kenji Inoue; Yosai Mori; Kazunori Miyata; Kazuhisa Sugiyama; Tomomi Higashide; Etsuo Chihara; Ryuichi Ideta; Satoshi Ishiko; Akitoshi Yoshida; Kana Tokumo; Yoshiaki Kiuchi; Tsutomu Ohashi; Toshiya Sakurai; Takako Sugimoto; Hideki Chuman; Makoto Aihara; Masaru Inatani; Kazuhiko Mori; Yoko Ikeda; Morio Ueno; Daniel Gaston; Paul Rafuse; Lesya Shuba; Joseph Saunders; Marcelo Nicolela; George Chichua; Sergo Tabagari; Panayiota Founti; Kar Seng Sim; Wee Yang Meah; Hui Meng Soo; Xiao Yin Chen; Anthi Chatzikyriakidou; Christina Keskini; Theofanis Pappas; Eleftherios Anastasopoulos; Alexandros Lambropoulos; Evangelia S Panagiotou; Dimitrios G Mikropoulos; Ewa Kosior-Jarecka; Augustine Cheong; Yuanhan Li; Urszula Lukasik; Monisha E Nongpiur; Rahat Husain; Shamira A Perera; Lydia Álvarez; Montserrat García; Héctor González-Iglesias; Andrés Fernández-Vega Cueto; Luis Fernández-Vega Cueto; Federico Martinón-Torres; Antonio Salas; Çilingir Oguz; Nevbahar Tamcelik; Eray Atalay; Bilge Batu; Murat Irkec; Dilek Aktas; Burcu Kasim; Yury S Astakhov; Sergei Y Astakhov; Eugeny L Akopov; Andreas Giessl; Christian Mardin; Claus Hellerbrand; Jessica N Cooke Bailey; Robert P Igo; Jonathan L Haines; Deepak P Edward; Steffen Heegaard; Sonia Davila; Patrick Tan; Jae H Kang; Louis R Pasquale; Friedrich E Kruse; André Reis; Trevor R Carmichael; Michael Hauser; Michele Ramsay; Georg Mossböck; Nilgun Yildirim; Kei Tashiro; Anastasios G P Konstas; Miguel Coca-Prados; Jia Nee Foo; Shigeru Kinoshita; Chie Sotozono; Toshiaki Kubota; Michael Dubina; Robert Ritch; Janey L Wiggs; Francesca Pasutto; Ursula Schlötzer-Schrehardt; Ying Swan Ho; Tin Aung; Wai Leong Tam; Chiea Chuen Khor
Journal:  JAMA       Date:  2021-02-23       Impact factor: 56.272

Review 7.  Neuromuscular Diseases Due to Chaperone Mutations: A Review and Some New Results.

Authors:  Jaakko Sarparanta; Per Harald Jonson; Sabita Kawan; Bjarne Udd
Journal:  Int J Mol Sci       Date:  2020-02-19       Impact factor: 5.923

Review 8.  Combating deleterious phase transitions in neurodegenerative disease.

Authors:  April L Darling; James Shorter
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2021-02-05       Impact factor: 4.739

9.  Genoppi is an open-source software for robust and standardized integration of proteomic and genetic data.

Authors:  Greta Pintacuda; Frederik H Lassen; Yu-Han H Hsu; April Kim; Jacqueline M Martín; Edyta Malolepsza; Justin K Lim; Nadine Fornelos; Kevin C Eggan; Kasper Lage
Journal:  Nat Commun       Date:  2021-05-10       Impact factor: 17.694

10.  Evidence of synergism among three genetic variants in a patient with LMNA-related lipodystrophy and amyotrophic lateral sclerosis leading to a remarkable nuclear phenotype.

Authors:  Kathryn Volkening; Sali M K Farhan; Jessica Kao; Cheryl Leystra-Lantz; Lee Cyn Ang; Adam McIntyre; Jian Wang; Robert A Hegele; Michael J Strong
Journal:  Mol Cell Biochem       Date:  2021-03-04       Impact factor: 3.396

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