| Literature DB >> 35860551 |
Jifan Chen1, Peile Jin1,2, Yue Song1,2, Liting Feng3, Jiayue Lu4, Hongjian Chen1,2,5, Lei Xin1,2, Fuqiang Qiu1,2, Zhang Cong1,2, Jiaxin Shen1,2, Yanan Zhao1,2, Wen Xu1,2, Chenxi Cai6, Yan Zhou7, Jinfeng Yang6, Chao Zhang1,2, Qin Chen3, Xiang Jing7, Pintong Huang1,2,8.
Abstract
Background: An increasing proportion of patients with diabetic kidney disease (DKD) has been observed among incident hemodialysis patients in large cities, which is consistent with the continuous growth of diabetes in the past 20 years. Purpose: In this multicenter retrospective study, we developed a deep learning (DL)-based automatic segmentation and radiomics technology to stratify patients with DKD and evaluate the possibility of clinical application across centers. Materials andEntities:
Keywords: deep learning; diabetic kidney disease; multicenter; radiomics; ultrasound
Year: 2022 PMID: 35860551 PMCID: PMC9290767 DOI: 10.3389/fonc.2022.876967
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 5.738
Figure 1The scheme of this study. (A) Flowchart of the Study; (B) Network Structure of DeepLabV3+; L, left; R, right; GLCM, gray level co-occurrence matrix; GLRLM, gray level run length matrix; GLSZM, gray level size zone matrix; First_order, first order statistics; NGTDM, neighboring gray tone difference matrix; GLDM, gray level dependence matrix. Conv: Convolution layer; Hospital A: The Second Affiliated Hospital of Zhejiang University School of Medicine, SAHZU; Hospital B: Tianjin Third Central Hospital, THTCH; Hospital C: The People’s Hospital of Yingshang, PHYS.
The Basic Characteristics of Study Patients in Three Medical Centers. SAHZU.
| Variables | SAHZU | TJTCH | PHYS |
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| T2DM | 131 (44.7%) | 63 (52.9%) | 52 (59.8%) |
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| DKD Stage II | 53 (18.1%) | 25 (21.0%) | 13 (14.9%) | ||||
| DKD Stage III | 91 (31.1%) | 31 (26.1%) | 20 (23.0%) | ||||
| DKD Stage IV | 18 (6.1%) | 0 (0.0%) | 2 (2.3%) | ||||
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| Age | 57 | 60 | 59 | 64 | 57 | 61 |
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| Male (%) | 81 | 96 | 36 | 29 | 13 | 15 |
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| BMI | 24.5 | 25.3 | 25.9 | 26.1 | 25.6 | 25.7 |
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| Hypertension | 56 | 130 | 36 | 41 | 20 | 18 |
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| DM duration | 3285 | 3650 | 2555 | 3650 | 2920 | 3650 |
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| HbA1c | 8.9 | 8.4 | 8.3 | 9.1 | 9.7 | 8.8 |
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| FBG | 8.8 | 7.4 | 7.5 | 8.6 | 9.7 | 9.3 |
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| Urea nitrogen | 4.3 | 8.2 | 4.7 | 6.5 | 5.7 | 7.2 |
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| Creatinine | 59.5 | 94 | 62 | 76 | 59.2 | 75 |
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| Uric acid | 300 | 382 | 281 | 319 | 241 | 288 |
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| ACR | 13.5 | 429.0 | 5.6 | 244.9 | 10.6 | 411.1 |
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| eGFR | 105.8 | 69.0 | 104.7 | 83.9 | 100.2 | 83.4 |
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*: P-value ≤ 0.05; #: P-value > 0.05; P1: P-value of three datasets in T2DM groups; P2: P-value of three datasets in DKD groups; SAHZU, The Second Affiliated Hospital of Zhejiang University School of Medicine; TJTCH, Tianjin Third Central Hospital; PHYS, The People’s Hospital of Yingshang; T2DM, type 2 diabetes mellitus; DKD, Diabetic Kidney Disease; BMI, body mass index; DM, diabetes mellitus; HbA1c, glycated hemoglobin A1c; FBG, fasting blood-glucose; ACR, Albumin-to-Creatinine Ratio; eGFR, estimated glomerular filtration rat.
Figure 2Manual and Automatic Segmentation using Ultrasound Images of the Patients.
Figure 3Interclass Correlation Coefficients and Density Plots between Extracted Radiomics Variables. The Interclass Correlation Coefficients plot (A) and Density Plots (B) between parenchyma and sinus in T2DM and DKD group. The Interclass Correlation Coefficients plot (C) and Density Plots (D) between manual and automatic ROI drawing methods in T2DM and DKD group.
Mean Intersection-over-union and Mean Pixel Accuracy in Three Medical Centers.
| Dataset | Miou | mPA |
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| SAHZU | 0.812 ± 0.003 | 0.890 ± 0.004 |
| TJTCH | 0.781 ± 0.009 | 0.870 ± 0.002 |
| PHYS | 0.805 ± 0.020 | 0.893 ± 0.007 |
Miou, mean intersection-over-union; mPA, mean pixel accuracy; SAHZU, Second Affiliated Hospital of Zhejiang University School of Medicine; TJTCH, Tianjin Third Central Hospital; PHYS, People’s Hospital of Yingshang.
Figure 4Variables extracted from Parenchyma and Sinus. (A) The ROI of parenchyma and sinus in two DKD stage patients. (B) The Mean-square error plot of LASSO regression in parenchyma and sinus model. (C) The Density Plots between Extracted Radiomics Variables in parenchyma and sinus.
Class of Extracted variables.
| Variables Class | Sinus | Parenchyma |
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| GLCM | 7 | 17 |
| GLRLM | 2 | 10 |
| GLSZM | 3 | 9 |
| First_order | 5 | 11 |
| NGTDM | 1 | 2 |
| GLDM | 0 | 6 |
| Wavelet | 3 | 18 |
GLCM, gray level co-occurrence matrix; GLRLM, gray level run length matrix; GLSZM, gray level size zone matrix; First_order, first order statistics; NGTDM, neighboring gray tone difference matrix; GLDM, gray level dependence matrix.
Figure 5Diagnostic Performance of ultrasound-based radiomics to stratify DKD patients. The diagnostic performance to differentiate DKD and T2DM patient in cross-validation datasets (A) and in independent test set (B). The diagnostic performance to differentiate high (≥ stage III) and low (≤ stage II) DKD stages in Cross-validation datasets (C) and in independent test set (D). AUC, Area under curve; *P < 0.05, **P < 0.01, ***P < 0.001; ns, no significance.
Figure 6Diagnostic Performance of deep learning-based automatic segmentation, radiomics for diabetic kidney disease. ns, no significance.