Literature DB >> 31755505

Development and evaluation of inexpensive automated deep learning-based imaging systems for embryology.

Manoj Kumar Kanakasabapathy1, Prudhvi Thirumalaraju1, Charles L Bormann2, Hemanth Kandula1, Irene Dimitriadis3, Irene Souter3, Vinish Yogesh1, Sandeep Kota Sai Pavan1, Divyank Yarravarapu1, Raghav Gupta1, Rohan Pooniwala1, Hadi Shafiee4.   

Abstract

Embryo assessment and selection is a critical step in an in vitro fertilization (IVF) procedure. Current embryo assessment approaches such as manual microscopy analysis done by embryologists or semi-automated time-lapse imaging systems are highly subjective, time-consuming, or expensive. Availability of cost-effective and easy-to-use hardware and software for embryo image data acquisition and analysis can significantly empower embryologists towards more efficient clinical decisions both in resource-limited and resource-rich settings. Here, we report the development of two inexpensive (<$100 and <$5) and automated imaging platforms that utilize advances in artificial intelligence (AI) for rapid, reliable, and accurate evaluations of embryo morphological qualities. Using a layered learning approach, we have shown that network models pre-trained with high quality embryo image data can be re-trained using data recorded on such low-cost, portable optical systems for embryo assessment and classification when relatively low-resolution image data are used. Using two test sets of 272 and 319 embryo images recorded on the reported stand-alone and smartphone optical systems, we were able to classify embryos based on their cell morphology with >90% accuracy.

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Year:  2019        PMID: 31755505      PMCID: PMC6934406          DOI: 10.1039/c9lc00721k

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  18 in total

1.  Interobserver and intraobserver variation in day 3 embryo grading.

Authors:  Allison E Baxter Bendus; Jacob F Mayer; Sharon K Shipley; William H Catherino
Journal:  Fertil Steril       Date:  2006-10-30       Impact factor: 7.329

2.  'Cheaper than a newcomer': on the social production of IVF policy in Israel.

Authors:  Daphna Birenbaum-Carmeli
Journal:  Sociol Health Illn       Date:  2004-11

3.  An inexpensive smartphone-based device for point-of-care ovulation testing.

Authors:  Vaishnavi Potluri; Preethi Sangeetha Kathiresan; Hemanth Kandula; Prudhvi Thirumalaraju; Manoj Kumar Kanakasabapathy; Sandeep Kota Sai Pavan; Divyank Yarravarapu; Anand Soundararajan; Karthik Baskar; Raghav Gupta; Neeraj Gudipati; John C Petrozza; Hadi Shafiee
Journal:  Lab Chip       Date:  2018-12-18       Impact factor: 6.799

4.  A study in transfer learning: leveraging data from multiple hospitals to enhance hospital-specific predictions.

Authors:  Jenna Wiens; John Guttag; Eric Horvitz
Journal:  J Am Med Inform Assoc       Date:  2014-01-30       Impact factor: 4.497

5.  Inter- and intra-observer variability of time-lapse annotations.

Authors:  Linda Sundvall; Hans Jakob Ingerslev; Ulla Breth Knudsen; Kirstine Kirkegaard
Journal:  Hum Reprod       Date:  2013-09-26       Impact factor: 6.918

6.  Dermatologist-level classification of skin cancer with deep neural networks.

Authors:  Andre Esteva; Brett Kuprel; Roberto A Novoa; Justin Ko; Susan M Swetter; Helen M Blau; Sebastian Thrun
Journal:  Nature       Date:  2017-01-25       Impact factor: 49.962

7.  Generation of human induced pluripotent stem cells from dermal fibroblasts.

Authors:  W E Lowry; L Richter; R Yachechko; A D Pyle; J Tchieu; R Sridharan; A T Clark; K Plath
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-15       Impact factor: 11.205

8.  Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning.

Authors:  Hoo-Chang Shin; Holger R Roth; Mingchen Gao; Le Lu; Ziyue Xu; Isabella Nogues; Jianhua Yao; Daniel Mollura; Ronald M Summers
Journal:  IEEE Trans Med Imaging       Date:  2016-02-11       Impact factor: 10.048

9.  Development and evaluation of inexpensive automated deep learning-based imaging systems for embryology.

Authors:  Manoj Kumar Kanakasabapathy; Prudhvi Thirumalaraju; Charles L Bormann; Hemanth Kandula; Irene Dimitriadis; Irene Souter; Vinish Yogesh; Sandeep Kota Sai Pavan; Divyank Yarravarapu; Raghav Gupta; Rohan Pooniwala; Hadi Shafiee
Journal:  Lab Chip       Date:  2019-11-22       Impact factor: 6.799

10.  Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization.

Authors:  Zev Rosenwaks; Olivier Elemento; Nikica Zaninovic; Iman Hajirasouliha; Pegah Khosravi; Ehsan Kazemi; Qiansheng Zhan; Jonas E Malmsten; Marco Toschi; Pantelis Zisimopoulos; Alexandros Sigaras; Stuart Lavery; Lee A D Cooper; Cristina Hickman; Marcos Meseguer
Journal:  NPJ Digit Med       Date:  2019-04-04
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  9 in total

1.  Development and evaluation of inexpensive automated deep learning-based imaging systems for embryology.

Authors:  Manoj Kumar Kanakasabapathy; Prudhvi Thirumalaraju; Charles L Bormann; Hemanth Kandula; Irene Dimitriadis; Irene Souter; Vinish Yogesh; Sandeep Kota Sai Pavan; Divyank Yarravarapu; Raghav Gupta; Rohan Pooniwala; Hadi Shafiee
Journal:  Lab Chip       Date:  2019-11-22       Impact factor: 6.799

2.  Adaptive adversarial neural networks for the analysis of lossy and domain-shifted datasets of medical images.

Authors:  Manoj Kumar Kanakasabapathy; Prudhvi Thirumalaraju; Hemanth Kandula; Fenil Doshi; Anjali Devi Sivakumar; Deeksha Kartik; Raghav Gupta; Rohan Pooniwala; John A Branda; Athe M Tsibris; Daniel R Kuritzkes; John C Petrozza; Charles L Bormann; Hadi Shafiee
Journal:  Nat Biomed Eng       Date:  2021-06-10       Impact factor: 25.671

3.  Deep learning early warning system for embryo culture conditions and embryologist performance in the ART laboratory.

Authors:  Charles L Bormann; Carol Lynn Curchoe; Prudhvi Thirumalaraju; Manoj K Kanakasabapathy; Raghav Gupta; Rohan Pooniwala; Hemanth Kandula; Irene Souter; Irene Dimitriadis; Hadi Shafiee
Journal:  J Assist Reprod Genet       Date:  2021-04-27       Impact factor: 3.357

Review 4.  3D-printed microneedles in biomedical applications.

Authors:  Sajjad Rahmani Dabbagh; Misagh Rezapour Sarabi; Reza Rahbarghazi; Emel Sokullu; Ali K Yetisen; Savas Tasoglu
Journal:  iScience       Date:  2020-12-31

5.  Evaluation of deep convolutional neural networks in classifying human embryo images based on their morphological quality.

Authors:  Prudhvi Thirumalaraju; Manoj Kumar Kanakasabapathy; Charles L Bormann; Raghav Gupta; Rohan Pooniwala; Hemanth Kandula; Irene Souter; Irene Dimitriadis; Hadi Shafiee
Journal:  Heliyon       Date:  2021-02-23

6.  A Fluorescent Biosensor for Sensitive Detection of Salmonella Typhimurium Using Low-Gradient Magnetic Field and Deep Learning via Faster Region-Based Convolutional Neural Network.

Authors:  Qiwei Hu; Siyuan Wang; Hong Duan; Yuanjie Liu
Journal:  Biosensors (Basel)       Date:  2021-11-11

Review 7.  Deep Learning-Enabled Technologies for Bioimage Analysis.

Authors:  Fazle Rabbi; Sajjad Rahmani Dabbagh; Pelin Angin; Ali Kemal Yetisen; Savas Tasoglu
Journal:  Micromachines (Basel)       Date:  2022-02-06       Impact factor: 2.891

8.  Performance of a deep learning based neural network in the selection of human blastocysts for implantation.

Authors:  Charles L Bormann; Manoj Kumar Kanakasabapathy; Prudhvi Thirumalaraju; Raghav Gupta; Rohan Pooniwala; Hemanth Kandula; Eduardo Hariton; Irene Souter; Irene Dimitriadis; Leslie B Ramirez; Carol L Curchoe; Jason Swain; Lynn M Boehnlein; Hadi Shafiee
Journal:  Elife       Date:  2020-09-15       Impact factor: 8.140

9.  Robust and generalizable embryo selection based on artificial intelligence and time-lapse image sequences.

Authors:  Jørgen Berntsen; Jens Rimestad; Jacob Theilgaard Lassen; Dang Tran; Mikkel Fly Kragh
Journal:  PLoS One       Date:  2022-02-02       Impact factor: 3.240

  9 in total

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