Literature DB >> 31636414

Building machines with DNA molecules.

Hamid Ramezani1, Hendrik Dietz2.   

Abstract

In nature, DNA molecules carry the hereditary information. But DNA has physical and chemical properties that make it attractive for uses beyond heredity. In this Review, we discuss the potential of DNA for creating machines that are both encoded by and built from DNA molecules. We review the main methods of DNA nanostructure assembly, describe recent advances in building increasingly complex molecular structures and discuss strategies for creating machine-like nanostructures that can be actuated and move. We highlight opportunities for applications of custom DNA nanostructures as scientific tools to address challenges across biology, chemistry and engineering.

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Year:  2019        PMID: 31636414      PMCID: PMC6976304          DOI: 10.1038/s41576-019-0175-6

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  159 in total

Review 1.  The thermodynamics of DNA structural motifs.

Authors:  John SantaLucia; Donald Hicks
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

2.  Light operated molecular machines.

Authors:  Serena Silvi; Margherita Venturi; Alberto Credi
Journal:  Chem Commun (Camb)       Date:  2010-12-06       Impact factor: 6.222

3.  Placement and orientation of individual DNA shapes on lithographically patterned surfaces.

Authors:  Ryan J Kershner; Luisa D Bozano; Christine M Micheel; Albert M Hung; Ann R Fornof; Jennifer N Cha; Charles T Rettner; Marco Bersani; Jane Frommer; Paul W K Rothemund; Gregory M Wallraff
Journal:  Nat Nanotechnol       Date:  2009-08-16       Impact factor: 39.213

4.  Dynamic DNA devices and assemblies formed by shape-complementary, non-base pairing 3D components.

Authors:  Thomas Gerling; Klaus F Wagenbauer; Andrea M Neuner; Hendrik Dietz
Journal:  Science       Date:  2015-03-27       Impact factor: 47.728

Review 5.  The coming of age of de novo protein design.

Authors:  Po-Ssu Huang; Scott E Boyken; David Baker
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

6.  Folding DNA into twisted and curved nanoscale shapes.

Authors:  Hendrik Dietz; Shawn M Douglas; William M Shih
Journal:  Science       Date:  2009-08-07       Impact factor: 47.728

7.  Block Copolymer Micellization as a Protection Strategy for DNA Origami.

Authors:  Nayan P Agarwal; Michael Matthies; Fatih N Gür; Kensuke Osada; Thorsten L Schmidt
Journal:  Angew Chem Int Ed Engl       Date:  2017-03-15       Impact factor: 15.336

8.  Placing and shaping liposomes with reconfigurable DNA nanocages.

Authors:  Zhao Zhang; Yang Yang; Frederic Pincet; Marc C Llaguno; Chenxiang Lin
Journal:  Nat Chem       Date:  2017-06-23       Impact factor: 24.427

9.  Programmable autonomous synthesis of single-stranded DNA.

Authors:  Jocelyn Y Kishi; Thomas E Schaus; Nikhil Gopalkrishnan; Feng Xuan; Peng Yin
Journal:  Nat Chem       Date:  2017-11-06       Impact factor: 24.427

10.  Magnetic Propulsion of Microswimmers with DNA-Based Flagellar Bundles.

Authors:  Alexander M Maier; Cornelius Weig; Peter Oswald; Erwin Frey; Peer Fischer; Tim Liedl
Journal:  Nano Lett       Date:  2016-02-01       Impact factor: 11.189

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  40 in total

1.  Choice of fluorophore affects dynamic DNA nanostructures.

Authors:  Kevin Jahnke; Helmut Grubmüller; Maxim Igaev; Kerstin Göpfrich
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

2.  Design Approaches and Computational Tools for DNA Nanostructures.

Authors:  Heeyuen Koh; Jae Gyung Lee; Jae Young Lee; Ryan Kim; Osamu Tabata; Kim Jin-Woo; DO-Nyun Kim
Journal:  IEEE Open J Nanotechnol       Date:  2021-10-14

3.  Reconfiguration of DNA nanostructures induced by enzymatic ligation treatment.

Authors:  Tanxi Bai; Jiayi Zhang; Kai Huang; Wen Wang; Bowen Chen; Yujie Li; Mengyao Zhao; Suoyu Zhang; Chenyou Zhu; Dongsheng Liu; Bryan Wei
Journal:  Nucleic Acids Res       Date:  2022-08-12       Impact factor: 19.160

4.  Best practice for improved accuracy: A critical reassessment of van't Hoff analysis of melt curves.

Authors:  Jacob M Majikes; Michael Zwolak; J Alexander Liddle
Journal:  Biophys J       Date:  2022-05-10       Impact factor: 3.699

5.  An intelligent DNA nanorobot for detection of MiRNAs cancer biomarkers using molecular programming to fabricate a logic-responsive hybrid nanostructure.

Authors:  Amin Mirzaiebadizi; Hadi Ravan; Shahriar Dabiri; Pourya Mohammadi; Arezoo Shahba; Mahsa Ziasistani; Mehrdad Khatami
Journal:  Bioprocess Biosyst Eng       Date:  2022-09-20       Impact factor: 3.434

6.  Bioorthogonal chemistry-based RNA labeling technologies: evolution and current state.

Authors:  Jerrin Thomas George; Seergazhi G Srivatsan
Journal:  Chem Commun (Camb)       Date:  2020-10-07       Impact factor: 6.222

7.  DNA Origami Post-Processing by CRISPR-Cas12a.

Authors:  Qiancheng Xiong; Chun Xie; Zhao Zhang; Longfei Liu; John T Powell; Qi Shen; Chenxiang Lin
Journal:  Angew Chem Int Ed Engl       Date:  2020-01-28       Impact factor: 15.336

8.  Hydrophobic Interactions between DNA Duplexes and Synthetic and Biological Membranes.

Authors:  Sioned F Jones; Himanshu Joshi; Stephen J Terry; Jonathan R Burns; Aleksei Aksimentiev; Ulrike S Eggert; Stefan Howorka
Journal:  J Am Chem Soc       Date:  2021-05-20       Impact factor: 15.419

9.  A synthetic tubular molecular transport system.

Authors:  Pierre Stömmer; Henrik Kiefer; Enzo Kopperger; Maximilian N Honemann; Massimo Kube; Friedrich C Simmel; Roland R Netz; Hendrik Dietz
Journal:  Nat Commun       Date:  2021-07-20       Impact factor: 14.919

10.  A nanoscale DNA force spectrometer capable of applying tension and compression on biomolecules.

Authors:  Yuchen Wang; Jenny V Le; Kyle Crocker; Michael A Darcy; Patrick D Halley; Dengke Zhao; Nick Andrioff; Cassie Croy; Michael G Poirier; Ralf Bundschuh; Carlos E Castro
Journal:  Nucleic Acids Res       Date:  2021-09-07       Impact factor: 19.160

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