Literature DB >> 19661424

Folding DNA into twisted and curved nanoscale shapes.

Hendrik Dietz1, Shawn M Douglas, William M Shih.   

Abstract

We demonstrate the ability to engineer complex shapes that twist and curve at the nanoscale from DNA. Through programmable self-assembly, strands of DNA are directed to form a custom-shaped bundle of tightly cross-linked double helices, arrayed in parallel to their helical axes. Targeted insertions and deletions of base pairs cause the DNA bundles to develop twist of either handedness or to curve. The degree of curvature could be quantitatively controlled, and a radius of curvature as tight as 6 nanometers was achieved. We also combined multiple curved elements to build several different types of intricate nanostructures, such as a wireframe beach ball or square-toothed gears.

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Year:  2009        PMID: 19661424      PMCID: PMC2737683          DOI: 10.1126/science.1174251

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  26 in total

1.  DNA-templated self-assembly of protein arrays and highly conductive nanowires.

Authors:  Hao Yan; Sung Ha Park; Gleb Finkelstein; John H Reif; Thomas H LaBean
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

2.  DNA nanotubes self-assembled from triple-crossover tiles as templates for conductive nanowires.

Authors:  Dage Liu; Sung Ha Park; John H Reif; Thomas H LaBean
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-06       Impact factor: 11.205

Review 3.  DNA in a material world.

Authors:  Nadrian C Seeman
Journal:  Nature       Date:  2003-01-23       Impact factor: 49.962

4.  Synthesis from DNA of a molecule with the connectivity of a cube.

Authors:  J H Chen; N C Seeman
Journal:  Nature       Date:  1991-04-18       Impact factor: 49.962

5.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

6.  DNA supercoiling promotes formation of a bent repression loop in lac DNA.

Authors:  J A Borowiec; L Zhang; S Sasse-Dwight; J D Gralla
Journal:  J Mol Biol       Date:  1987-07-05       Impact factor: 5.469

7.  Nucleic acid junctions and lattices.

Authors:  N C Seeman
Journal:  J Theor Biol       Date:  1982-11-21       Impact factor: 2.691

8.  DNA double-crossover molecules.

Authors:  T J Fu; N C Seeman
Journal:  Biochemistry       Date:  1993-04-06       Impact factor: 3.162

9.  A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron.

Authors:  William M Shih; Joel D Quispe; Gerald F Joyce
Journal:  Nature       Date:  2004-02-12       Impact factor: 49.962

10.  Rapid prototyping of 3D DNA-origami shapes with caDNAno.

Authors:  Shawn M Douglas; Adam H Marblestone; Surat Teerapittayanon; Alejandro Vazquez; George M Church; William M Shih
Journal:  Nucleic Acids Res       Date:  2009-06-16       Impact factor: 16.971

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  258 in total

1.  Complex shapes self-assembled from single-stranded DNA tiles.

Authors:  Bryan Wei; Mingjie Dai; Peng Yin
Journal:  Nature       Date:  2012-05-30       Impact factor: 49.962

Review 2.  Knitting complex weaves with DNA origami.

Authors:  William M Shih; Chenxiang Lin
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

3.  Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA.

Authors:  Florian C Oberstrass; Louis E Fernandes; Zev Bryant
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

4.  Nanotechnology: The importance of being modular.

Authors:  Paul W K Rothemund; Ebbe Sloth Andersen
Journal:  Nature       Date:  2012-05-31       Impact factor: 49.962

5.  Nanoparticle assembly: made to order.

Authors:  Sharon C Glotzer; Joshua A Anderson
Journal:  Nat Mater       Date:  2010-11       Impact factor: 43.841

6.  Interconnecting gold islands with DNA origami nanotubes.

Authors:  Baoquan Ding; Hao Wu; Wei Xu; Zhao Zhao; Yan Liu; Hongbin Yu; Hao Yan
Journal:  Nano Lett       Date:  2010-11-11       Impact factor: 11.189

Review 7.  Spatially-interactive biomolecular networks organized by nucleic acid nanostructures.

Authors:  Jinglin Fu; Minghui Liu; Yan Liu; Hao Yan
Journal:  Acc Chem Res       Date:  2012-05-29       Impact factor: 22.384

8.  Placing molecules with Bohr radius resolution using DNA origami.

Authors:  Jonas J Funke; Hendrik Dietz
Journal:  Nat Nanotechnol       Date:  2015-10-19       Impact factor: 39.213

9.  Guiding the folding pathway of DNA origami.

Authors:  Katherine E Dunn; Frits Dannenberg; Thomas E Ouldridge; Marta Kwiatkowska; Andrew J Turberfield; Jonathan Bath
Journal:  Nature       Date:  2015-08-19       Impact factor: 49.962

10.  Automated Sequence Design of 3D Polyhedral Wireframe DNA Origami with Honeycomb Edges.

Authors:  Hyungmin Jun; Tyson R Shepherd; Kaiming Zhang; William P Bricker; Shanshan Li; Wah Chiu; Mark Bathe
Journal:  ACS Nano       Date:  2019-01-24       Impact factor: 15.881

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