Literature DB >> 35756857

Design Approaches and Computational Tools for DNA Nanostructures.

Heeyuen Koh1, Jae Gyung Lee2, Jae Young Lee1, Ryan Kim3,4, Osamu Tabata5, Kim Jin-Woo4,6,7, DO-Nyun Kim1,2,8.   

Abstract

Designing a structure in nanoscale with desired shape and properties has been enabled by structural DNA nanotechnology. Design strategies in this research field have evolved to interpret various aspects of increasingly more complex nanoscale assembly and to realize molecular-level functionality by exploring static to dynamic characteristics of the target structure. Computational tools have naturally been of significant interest as they are essential to achieve a fine control over both shape and physicochemical properties of the structure. Here, we review the basic design principles of structural DNA nanotechnology together with its computational analysis and design tools.

Entities:  

Keywords:  DNA; computational tools; design principle; nanotechnology

Year:  2021        PMID： 35756857      PMCID： PMC9232119          DOI： 10.1109/ojnano.2021.3119913

Source DB:  PubMed          Journal:  IEEE Open J Nanotechnol        ISSN： 2644-1292


  143 in total

Review 1.  The thermodynamics of DNA structural motifs.

Authors:  John SantaLucia; Donald Hicks
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

Review 2.  Advancing Biophysics Using DNA Origami.

Authors:  Wouter Engelen; Hendrik Dietz
Journal:  Annu Rev Biophys       Date:  2021-03-01       Impact factor: 12.981

3.  Twist-Bend Coupling and the Torsional Response of Double-Stranded DNA.

Authors:  Stefanos K Nomidis; Franziska Kriegel; Willem Vanderlinden; Jan Lipfert; Enrico Carlon
Journal:  Phys Rev Lett       Date:  2017-05-26       Impact factor: 9.161

Review 4.  Multifunctional DNA Origami Nanoplatforms for Drug Delivery.

Authors:  Xuehe Lu; Jianbing Liu; Xiaohui Wu; Baoquan Ding
Journal:  Chem Asian J       Date:  2019-06-17

5.  Folding DNA into twisted and curved nanoscale shapes.

Authors:  Hendrik Dietz; Shawn M Douglas; William M Shih
Journal:  Science       Date:  2009-08-07       Impact factor: 47.728

6.  Programming Structured DNA Assemblies to Probe Biophysical Processes.

Authors:  Eike-Christian Wamhoff; James L Banal; William P Bricker; Tyson R Shepherd; Molly F Parsons; Rémi Veneziano; Matthew B Stone; Hyungmin Jun; Xiao Wang; Mark Bathe
Journal:  Annu Rev Biophys       Date:  2019-05-06       Impact factor: 12.981

Review 7.  Computational Approaches to Nucleic Acid Origami.

Authors:  Hosna Jabbari; Maral Aminpour; Carlo Montemagno
Journal:  ACS Comb Sci       Date:  2015-09-17       Impact factor: 3.784

8.  DNA-assembled nanoarchitectures with multiple components in regulated and coordinated motion.

Authors:  Pengfei Zhan; Maximilian J Urban; Steffen Both; Xiaoyang Duan; Anton Kuzyk; Thomas Weiss; Na Liu
Journal:  Sci Adv       Date:  2019-11-29       Impact factor: 14.136

Review 9.  Emerging applications at the interface of DNA nanotechnology and cellular membranes: Perspectives from biology, engineering, and physics.

Authors:  Weitao Wang; D Sebastian Arias; Markus Deserno; Xi Ren; Rebecca E Taylor
Journal:  APL Bioeng       Date:  2020-12-08

10.  Rapid prototyping of arbitrary 2D and 3D wireframe DNA origami.

Authors:  Hyungmin Jun; Xiao Wang; Molly F Parsons; William P Bricker; Torsten John; Shanshan Li; Steve Jackson; Wah Chiu; Mark Bathe
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971
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