| Literature DB >> 31614697 |
Abstract
Dianthin enzymes belong to ribosome-inactivating proteins (RIPs) of type 1, i.e., they only consist of a catalytic domain and do not have a cell binding moiety. Dianthin-30 is very similar to saporin-S3 and saporin-S6, two RIPs often used to design targeted toxins for tumor therapy and already tested in some clinical trials. Nevertheless, dianthin enzymes also exhibit differences to saporin with regard to structure, efficacy, toxicity, immunogenicity and production by heterologous expression. Some of the distinctions might make dianthin more suitable for targeted tumor therapies than other RIPs. The present review provides an overview of the history of dianthin discovery and illuminates its structure, function and role in targeted toxins. It further discusses the option to increase the efficacy of dianthin by endosomal escape enhancers.Entities:
Keywords: Dianthus caryophyllus L.; cancer therapy; dianthin; endosomal escape; immunotoxin; ribosome-inactivating protein; targeted toxin
Year: 2019 PMID: 31614697 PMCID: PMC6832487 DOI: 10.3390/toxins11100592
Source DB: PubMed Journal: Toxins (Basel) ISSN: 2072-6651 Impact factor: 4.546
List of dianthin enzymes and of other ribosome-inactivating proteins (RIPs) that are directly compared to dianthins in this article. Data are obtained from the review composed by Schrot et al. [16] except for saporin-S3 [21], crotin-3 [12] and ricin A-chain [22]. In some cases, RIPs described in this review cannot be unequivocally assigned since the identity of that RIP was not fully clarified in the corresponding publication.
| RIP | Type | Plant | Plant Source | Molecular Mass (kDa) |
|---|---|---|---|---|
| dianthin-29 | 1 | leaves | 29.0 | |
| dianthin-30 | 1 | leaves | 29.5 | |
| dianthin-32 | 1 | leaves | 31.7 | |
| saporin-S3 | 1 | seeds | 28.6 | |
| saporin-S6 | 1 | seeds | 28.6 | |
| saporin-S9 | 1 | seeds | 28.5 | |
| saporin-R1 | 1 | roots | 30.2 | |
| saporin-R2 | 1 | roots | 30.9 | |
| PAP 1 | 1 | leaves | 29–30 | |
| PAP-S 1 | 1 | seeds | 30 | |
| PAP-R 1 | 1 | roots | 29.8 | |
| PD-S2 2 | 1 | seeds | 29.6 | |
| gelonin | 1 | seeds | 30–31 | |
| bryodin | 1 | roots | 29 | |
| momordin | 1 | seeds | 31 | |
| momorcochin-S | 1 | seeds | 30 | |
| trichokirin | 1 | seeds | 27 | |
| tritin | 1 | germ | 30 | |
| crotin-3 | 1 | seeds | n. a. 3 | |
| lychnin | 1 | seeds | 26.1 | |
| bouganin | 1 | leaves | 26.2 | |
| colocin-1 | 1 | seeds | 26.3 | |
| asparin | 1 | seeds | 29.8–30.5 | |
| barley RIP | 1 | seeds | 30 | |
| ricin A-chain | 2 | seeds | 32 | |
| ricin | 2 | seeds | 62.8 | |
| abrin-c | 2 | seeds | 60.1–62.5 | |
| modeccin | 2 | roots | 57–63 | |
| viscumin | 2 | leaves | 115–125 | |
| volkensin | 2 | roots | 62 |
1 PAP, pokeweed antiviral protein; without suffix, the protein is obtained from leaves, suffixes -S and -R refer to seeds and roots as source material, respectively. 2 PD-S2, Phytolacca dioica L. ribosome-inactivating protein number 2 from seeds. 3 n. a., information not available.
Figure 1Sequence alignment of the amino acids from dianthin-30 and dianthin-32 (as far as is known) with other RIPs. Asterisks indicate fully conserved residues, colons show strongly similar and periods show weakly similar residues. Highlighted amino acids are involved in the stabilization of the substrate and in the catalysis [38]. Sequences were obtained from the UniProt Knowledgebase (UniProtKB), IDs P24477, P24476, P20656, P93444, P33186, P33185, and P02879. The alignment was conducted with the Clustal Omega tool [39].
Figure 2Three-dimensional structure of (a) dianthin-30 (Protein Data Bank (PDB) ID: 1RL0) [38], (b) saporin-S6 (PDB ID: 1QI7) [47], and (c) ricin A-chain (PDB ID: 1RTC) [48]. The yellow residues are the conserved tyrosines in the active center highlighted in Figure 1, the right ones of them corresponding to Tyr-73 of dianthin-30. Negative charged residues are depicted in red and positive residues in blue. The glutamate and arginine of the catalytic pocket are designated with E and R, respectively. The active site of dianthin-30 and saporin-S6 is easily accessible compared to ricin and other RIPs, and saporin-S6 is characterized by a more negative potential compared to dianthin-30 [38].
Ribosome-inactivating potential of dianthin-30 and dianthin-32 as well as derivates thereof directly compared to other RIPs in several studies. The experimental conditions partly vary substantially between the different publications so that further method information in the source literature must be taken into account for a more detailed comparison of the various RIPs. The activity was typically quantitated by measuring inhibition of the protein synthesis in translation assays, e.g., by (14C)-leucine incorporation or poly (U)-directed polymerization of (14C)-phenylalanine.
| RIP or RIP Fusion Proteins/Conjugates | Translation Inhibition IC50 (nM) | Ribosomal Source | Reference |
|---|---|---|---|
| dianthin-30 | 0.133 | rabbit reticulocyte lysate | [ |
| 0.18 | rabbit reticulocyte lysate | [ | |
| 0.227 2 | rabbit reticulocyte lysate | [ | |
| 0.29 1,2 | rabbit reticulocyte lysate | [ | |
| 0.31 | rabbit reticulocyte lysate | [ | |
| 0.37 2 | rabbit reticulocyte lysate | [ | |
| 0.41 2 | rabbit reticulocyte lysate | [ | |
| 0.61 | rabbit reticulocyte lysate | [ | |
| 0.35–0.70 | wheat germ extracts | [ | |
| 110 | Leishmania infantum | [ | |
| 153 |
| [ | |
| 6478 |
| [ | |
| dianthin-30-anti-CD30 3 | 0.1 | rabbit reticulocyte lysate | [ |
| 1.054 2 | rabbit reticulocyte lysate | [ | |
| KFT25-dianthin-30 4 | 0.47 2 | rabbit reticulocyte lysate | [ |
| pHA2-dianthin-30 4 | 0.53 2 | rabbit reticulocyte lysate | [ |
| pJVE-dianthin-30 4 | 0.54 2 | rabbit reticulocyte lysate | [ |
| dianthin-32 | 0.02 |
| [ |
| 0.11 | rabbit reticulocyte lysate | [ | |
| 0.12 | rabbit reticulocyte lysate | [ | |
| 0.12 | rabbit reticulocyte lysate | [ | |
| 0.35–0.70 | wheat germ extracts | [ | |
| 0.63 |
| [ | |
| 7 |
| [ | |
| 27 |
| [ | |
| 30 |
| [ | |
| 66 |
| [ | |
| 331 |
| [ | |
| 991 |
| [ | |
| >1000 |
| [ | |
| dianthin-32-F(ab’)2 | 0.167 | rabbit reticulocyte lysate | [ |
| saporin-S3 | 0.01–0.02 | rabbit reticulocyte lysate | [ |
| saporin-S6 | 0.01–0.02 | rabbit reticulocyte lysate | [ |
| 0.033 | rabbit reticulocyte lysate | [ | |
| 17 |
| [ | |
| 33 |
| [ | |
| 116 |
| [ | |
| 2630 |
| [ | |
| >7133 |
| [ | |
| saporin-S6-F(ab’)2 | 0.086 | rabbit reticulocyte lysate | [ |
| saporin-S9 | 26 |
| [ |
| 31 |
| [ | |
| saporin-R1 | 0.86 | rabbit reticulocyte lysate | [ |
| 927 |
| [ | |
| >1000 |
| [ | |
| >1000 |
| [ | |
| saporin-R2 | 0.47 | rabbit reticulocyte lysate | [ |
| 423 |
| [ | |
| >1000 |
| [ | |
| >1000 |
| [ | |
| PAP | 0.14 |
| [ |
| 0.29 |
| [ | |
| PAP-S | 0.037 | rabbit reticulocyte lysate | [ |
| 17 |
| [ | |
| 21 |
| [ | |
| 1040 |
| [ | |
| 1230 |
| [ | |
| 1570 |
| [ | |
| PAP-S-F(ab’)2 | 0.41 | rabbit reticulocyte lysate | [ |
| PAP-R | 40 |
| [ |
| 53 |
| [ | |
| 2005 |
| [ | |
| gelonin | 0.4 | rabbit reticulocyte lysate | [ |
| 2590 |
| [ | |
| 3330 |
| [ | |
| >3330 |
| [ | |
| >3300 |
| [ | |
| >11,000 |
| [ | |
| gelonin-F(ab’)2 | 6.2 | rabbit reticulocyte lysate | [ |
| bryodin | 0.12 | rabbit reticulocyte lysate | [ |
| 430 |
| [ | |
| 3330 |
| [ | |
| >3330 |
| [ | |
| >3330 |
| [ | |
| >10,932 |
| [ | |
| bryodin-F(ab’)2 | 0.247 | rabbit reticulocyte lysate | [ |
| momordin | 0.06 | rabbit reticulocyte lysate | [ |
| 0.06 | rabbit reticulocyte lysate | [ | |
| 72 |
| [ | |
| 190 |
| [ | |
| 190 |
| [ | |
| 300 |
| [ | |
| 857 |
| [ | |
| 1130 |
| [ | |
| 3330 |
| [ | |
| >3330 |
| [ | |
| momordin-F(ab’)2 | 0.44 | rabbit reticulocyte lysate | [ |
| trichokirin | 0.087 | rabbit reticulocyte lysate | [ |
| 1265 |
| [ | |
| 1747 |
| [ | |
| >3330 |
| [ | |
| trichokirin-F(ab’)2 | 0.29 | rabbit reticulocyte lysate | [ |
| tritin | 22 |
| [ |
| >2200 |
| [ | |
| crotin-3 | 0.2 | rabbit reticulocyte lysate | [ |
| 13 |
| [ | |
| 19 |
| [ | |
| 40 |
| [ | |
| barley RIP | 3 |
| [ |
| 1598 |
| [ | |
| >2200 |
| [ | |
| 3330 |
| [ | |
| 4922 |
| [ | |
| ricin A-chain | 0.066 | rabbit reticulocyte lysate | [ |
| 0.17 |
| [ | |
| 0.3 | rabbit reticulocyte lysate | [ | |
| 21 |
| [ | |
| 800 | wheat germ extracts | [ | |
| ricin A-chain-F(ab’)2 | 0.078 | rabbit reticulocyte lysate | [ |
| ricin | 1030 |
| [ |
| >1700 |
| [ | |
| >1700 |
| [ | |
| >1700 |
| [ | |
| >3300 |
| [ | |
| abrin | 5 |
| [ |
| 49 |
| [ | |
| 100 |
| [ | |
| >1700 |
| [ | |
| modeccin | 1700 |
| [ |
| >1700 |
| [ | |
| >1700 |
| [ | |
| >1700 |
| [ | |
| viscumin | 1700 |
| [ |
| >1700 |
| [ | |
| >1700 |
| [ | |
| >1700 |
| [ | |
| volkensin | 830 |
| [ |
| 1700 |
| [ | |
| >1700 |
| [ | |
| >1700 |
| [ | |
| >3300 |
| [ |
1 Dianthin-30 (Δ255–270). 2 Recombinant protein. 3 CD, cluster of differentiation. 4 KFT25, N-terminus of protein G of the vesicular stomatitis virus [59], pHA2, N-terminus of the HA2 hemagglutinin of influenza virus [60], pJVE, proper name of a synthetic peptide [61].
Enzymatic activity of dianthin-30 and dianthin-30 derivates in comparison to other RIPs. As in Table 2, the experimental conditions vary from study to study. Adenine release is indicated as picomoles adenine released from the indicated substrate per picomole of RIP in one hour. Most of the data result from end point measurements so that kinetic effects such as substrate depletion might have affected the final outcome.
| RIP or RIP Fusion Proteins/Conjugates | Enzymatic Activity Adenine Release (pmol/pmol/h) | Substrate | Reference |
|---|---|---|---|
| dianthin-30 | 0.54 | poly(A) | [ |
| 0.57 | rat ribosomes | [ | |
| <10 1 | 60S ribosomal subunit | [ | |
| <10 1 | poly(A) | [ | |
| 23.99 | herring sperm DNA | [ | |
| 67 1 | herring sperm DNA | [ | |
| 110 1 | (dA)30 | [ | |
| 140 1 | 28S-rRNA | [ | |
| 330 1 | mitochondrial DNA | [ | |
| 644 | herring sperm DNA | [ | |
| 775 1 | herring sperm DNA | [ | |
| dianthin-30-EGF 3 | 42 1 | herring sperm DNA | [ |
| 67 1 | (dA)30 | [ | |
| 116 1 | herring sperm DNA | [ | |
| 218 1 | herring sperm DNA | [ | |
| dianthin-30-anti-CD30 4 | 247 1 | herring sperm DNA | [ |
| 346 | herring sperm DNA | [ | |
| saporin-S3 | <10 1 | 60S ribosomal subunit | [ |
| <10 1 | poly(A) | [ | |
| 50 1 | mitochondrial DNA | [ | |
| 125 1 | (dA)30 | [ | |
| 140 1 | 28S-rRNA | [ | |
| 312 1 | herring sperm DNA | [ | |
| 397 | herring sperm DNA | [ | |
| 670 1 | herring sperm DNA | [ | |
| saporin-S3-EGF 3 | 70 1 | (dA)30 | [ |
| 80 1 | herring sperm DNA | [ | |
| 240 1 | herring sperm DNA | [ | |
| saporin-S6 | 1.91 | rat ribosomes | [ |
| 18.3 | herring sperm DNA | [ | |
| >30 | poly(A) | [ | |
| 37.61 | herring sperm DNA | [ | |
| 439 1 | herring sperm DNA | [ | |
| saporin-S6-anti-CD30 4 | 176 | herring sperm DNA | [ |
| saporin-L1 | 861 | herring sperm DNA | [ |
| saporin-L1-anti-CD30 4 | 429 | herring sperm DNA | [ |
| saporin-L2 | 934 | herring sperm DNA | [ |
| PAP-S | 519 | herring sperm DNA | [ |
| PAP-S-anti-CD22 4 | 115 | herring sperm DNA | [ |
| PAP-R | <d. l. 2 | poly(A) | [ |
| 0.51 | rat ribosomes | [ | |
| 50.32 | herring sperm DNA | [ | |
| gelonin | 12.9 | herring sperm DNA | [ |
| 579 | herring sperm DNA | [ | |
| gelonin-anti-CD30 4 | 130 | herring sperm DNA | [ |
| momordin | <d. l. 2 | poly(A) | [ |
| 0.39 | rat ribosomes | [ | |
| 0.75 | herring sperm DNA | [ | |
| 2.71 | herring sperm DNA | [ | |
| 18 | herring sperm DNA | [ | |
| momordin-anti-CD30 4 | 1.8 | herring sperm DNA | [ |
| lychnin | <d. l. 2 | poly(A) | [ |
| 0.72 | rat ribosomes | [ | |
| 2.95 | herring sperm DNA | [ | |
| bouganin | <d. l. 2 | poly(A) | [ |
| 0.48 | rat ribosomes | [ | |
| 37.77 | herring sperm DNA | [ | |
| ricin A chain | <d. l. 2 | poly(A) | [ |
| 0.62 | rat ribosomes | [ | |
| 4.85 | herring sperm DNA | [ | |
| <10 | 60S ribosomal subunit | [ | |
| <10 | poly(A) | [ | |
| 22 | herring sperm DNA | [ | |
| 27.6 1 | herring sperm DNA | [ | |
| 43 | herring sperm DNA | [ | |
| 185 | 28S-rRNA | [ | |
| ricin A chain-EGF 3 | 17 1 | herring sperm DNA | [ |
| ricin A chain-anti-CD30 4 | 7.2 1 | herring sperm DNA | [ |
| ricin | 7.5 | herring sperm DNA | [ |
| <10 | mitochondrial DNA | [ | |
| <10 | 60S ribosomal subunit | [ | |
| 12 | 28S-rRNA | [ | |
| 70 | herring sperm DNA | [ |
1 Recombinant RIP. 2 Less than detection limit. 3 EGF, epidermal growth factor. 4 CD, cluster of differentiation.
Effect of dianthin-30, dianthin-32 and other RIPs on virus-infected cells. Readout was the inhibition of plaque formation caused by infected cells or the inhibition of lesion formation in tobacco leaves (Nicotiana spec.).
| RIP | Concentration (µg/mL) | Virus 1 | Target | Inhibition(%) | Reference |
|---|---|---|---|---|---|
| dianthin-30 | 0.5 | TMV | 63 | [ | |
| 1 | TMV | 91 | [ | ||
| 5 | TMV | 96 | [ | ||
| 10 | TMV | 99 | [ | ||
| dianthin-32 | 0.01 | TMV | 0 | [ | |
| 0.05 | TMV | 0 | [ | ||
| 0.1 | TMV | 57 | [ | ||
| 0.5 | TMV | 76 | [ | ||
| 0.5 | TMV | 33 | [ | ||
| 1 | TMV | 91 | [ | ||
| 1 | TMV | 84 | [ | ||
| 2 | TMV | 91 | [ | ||
| 5 | TMV | 86 | [ | ||
| 10 | TMV | 100 | [ | ||
| 10 | TMV | 98 | [ | ||
| 100 | TMV | 100 | [ | ||
| 100 | HSV-1 | HEp-2 cells | 77 | [ | |
| 200 | HSV-1 | HEp-2 cells | 85 | [ | |
| PAP | 0.01 | TMV | 0 | [ | |
| 0.05 | TMV | 0 | [ | ||
| 0.1 | TMV | 57 | [ | ||
| 0.5 | TMV | 76 | [ | ||
| 1 | TMV | 91 | [ | ||
| 2 | TMV | 91 | [ | ||
| 10 | TMV | 100 | [ | ||
| 100 | TMV | 100 | [ | ||
| PAP-S | 100 | HSV-1 | HEp-2 cells | 81 | [ |
| 200 | HSV-1 | HEp-2 cells | 90 | [ | |
| gelonin | 100 | HSV-1 | HEp-2 cells | 31 | [ |
| 200 | HSV-1 | HEp-2 cells | 83 | [ | |
| momordin | 100 | HSV-1 | HEp-2 cells | 70 | [ |
| 200 | HSV-1 | HEp-2 cells | 81 | [ | |
| tritin | 10 | TMV | 36 | [ | |
| 100 | TMV | 23 | [ | ||
| barley RIP | 10 | TMV | 33 | [ | |
| 100 | TMV | 16 | [ | ||
| ricin A-chain | 10 | TMV | 20 | [ | |
| 100 | TMV | 25 | [ |
1 TMV, tobacco-mosaic virus; HSV-1, herpes simplex virus-1.
Cytotoxicity of dianthin-30 and dianthin-32 as well as derivates thereof in comparison to other RIPs. Cells were incubated with different concentrations of the RIP. The toxin concentration resulting in half maximal effect (IC50) was determined by readouts that differ between the studies.
| RIP or RIP Fusion Proteins/Conjugates | Cytotoxicity IC50 (nM) | Cells/Cell Line | Reference |
|---|---|---|---|
| dianthin-30 | >100 | D430B | [ |
| >100 1 | D430B | [ | |
| ~30 | L540 | [ | |
| ~100 1 | L540 | [ | |
| >100 | L428 | [ | |
| ~100 1 | L428 | [ | |
| 712 1 | Jurkat | [ | |
| 203 1,2 | Jurkat | [ | |
| 910 | H9 | [ | |
| dianthin-30-EGF 3 | 0.45 1 | HER14 4 | [ |
| <0.0000001 1,2 | HER14 4 | [ | |
| dianthin-30-anti-CD30 5 | 0.479 | D430B | [ |
| 0.162 1 | D430B | [ | |
| 0.324 | L540 | [ | |
| 0.045 1 | L540 | [ | |
| 0.355 | L428 | [ | |
| 0.182 1 | L428 | [ | |
| 7.6 | K562 | [ | |
| >50 1 | K562 | [ | |
| dianthin-30-cetuximab | >10 1 | HCT-116 | [ |
| 0.0053 1,2 | HCT-116 | [ | |
| dianthin-30-panitumumab | >10 1 | HCT-116 | [ |
| 0.0015 1,2 | HCT-116 | [ | |
| dianthin-30-trastuzumab | >10 1 | BT-474 | [ |
| 0.023 1,2 | BT-474 | [ | |
| dianthin-30-mAb2C4 | 10–20 | SB2b | [ |
| 0.01 2 | SB2b | [ | |
| 0.01 2 | JK2 | [ | |
| 0.02 2 | U87MG | [ | |
| transferrin-dianthin-30 | 1.5 1 | Jurkat | [ |
| 0.018 1,2 | Jurkat | [ | |
| KFT25-dianthin-30 6 | >1000 1 | Jurkat | [ |
| 712 1,2 | Jurkat | [ | |
| pHA2-dianthin-30 6 | >1000 1 | Jurkat | [ |
| 610 1,2 | Jurkat | [ | |
| pJVE-dianthin-30 6 | 814 1 | Jurkat | [ |
| 183 1,2 | Jurkat | [ | |
| dianthin-32 | >3200 | H9 | [ |
| dianthin-32-F(ab’)2 | 0.011 | PBMC 7 | [ |
| saporin-S3 | 611 1 | HeLa | [ |
| 0.24 1,2 | HeLa | [ | |
| >1000 1 | CaSki | [ | |
| 0.26 1,2 | CaSki | [ | |
| 53 1 | HER14 4 | [ | |
| 0.08 1,2 | HER14 4 | [ | |
| saporin-S3-EGF 3 | 53 1 | HeLa | [ |
| 0.00070 1,2 | HeLa | [ | |
| 5 1 | CaSki | [ | |
| 0.00013 1,2 | CaSki | [ | |
| 2.5 1 | HER14 4 | [ | |
| 0.00090 1,2 | HER14 4 | [ | |
| 57 1 | HER14 4 | [ | |
| <0.0000001 1,2 | HER14 4 | [ | |
| saporin-S6-F(ab’)2 | 0.0055 | PBMC 7 | [ |
| PAP-S-F(ab’)2 | 0.0026 | PBMC 7 | [ |
| gelonin-mAb2C4 | 0.02 2 | U87MG | [ |
| gelonin-F(ab’)2 | 10 | PBMC 7 | [ |
| bryodin-F(ab’)2 | 0.0288 | PBMC 7 | [ |
| momordin-F(ab’)2 | 0.02 | PBMC 7 | [ |
| trichokirin-F(ab’)2 | 0.0323 | PBMC 7 | [ |
| ricin A-chain | 280 | Jurkat | [ |
| 140 2 | Jurkat | [ | |
| ricin A-chain-EGF 3 | >1000 1 | HER14 4 | [ |
| 61 1,2 | HER14 4 | [ | |
| ricin A-chain-F(ab’)2 | 5 | PBMC 7 | [ |
1 Recombinant RIP. 2 In the presence of an endosomal escape enhancer. 3 EGF, epidermal growth factor. 4 HER14, Swiss mouse embryo NIH-3T3 cells transfected with human EGFR. 5 CD, cluster of differentiation. 6 KFT25, N-terminus of protein G of the vesicular stomatitis virus [59]; pHA2, N-terminus of the HA2 hemagglutinin of influenza virus [60]; pJVE, proper name of a synthetic peptide [61]. 7 PBMC, peripheral blood mononuclear cells.
Antibody titer of dianthin-32 and other RIPs in the sera of rabbits immunized with RIPs, according to Strocchi et al. [25].
| RIP | Antibody Titer (Arbitrary Units) |
|---|---|
| saporin-S6 | 44.0 |
| lychnin | 21.0 |
| momordin | 15.0 |
| colocin-1 | 7.0 |
| momorcochin-S | 6.50 |
| dianthin-32 | 4.18 |
| PAP-R | 2.83 |
| trichokirin | 2.16 |
| bryodin-R | 1.50 |