| Literature DB >> 31604986 |
Helen W Cui1, Mafalda D Silva2, Andrew W Mills3, Bernard V North3, Benjamin W Turney4.
Abstract
We aimed to develop and evaluate a statistical model, which included known pre-treatment factors and new computed tomography texture analysis (CTTA) variables, for its ability to predict the likelihood of a successful outcome after extracorporeal shockwave lithotripsy (SWL) treatment for renal and ureteric stones. Up to half of patients undergoing SWL may fail treatment. Better prediction of which cases will likely succeed SWL will help patients to make an informed decision on the most effective treatment modality for their stone. 19 pre-treatment factors for SWL success, including 6 CTTA variables, were collected from 459 SWL cases at a single centre. Univariate and multivariable analyses were performed by independent statisticians to predict the probability of a stone free (both with and without residual fragments) outcome after SWL. A multivariable model had an overall accuracy of 66% on Receiver Operator Curve (ROC) analysis to predict for successful SWL outcome. The variables most frequently chosen for the model were those which represented stone size. Although previous studies have suggested SWL can be reliably predicted using pre-treatment factors and that analysis of CT stone images may improve outcome prediction, the results from this study have not produced a useful model for SWL outcome prediction.Entities:
Year: 2019 PMID: 31604986 PMCID: PMC6788981 DOI: 10.1038/s41598-019-51026-x
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Demographics and clinical outcomes.
| Values are median (IQR [range]) or number (%) | |
|---|---|
| No. treated cases | 459 |
| No. Male (%) | 300/459 (65.4) |
| Patient age (yrs) | 54.0 (44–66 [20–94]) |
| No. Left side (%) | 254/459 (55.3) |
| SSD; mm* | 106.2 (84.8–122.8 [36–184]) |
| No. stone location (%) | |
| Upper pole | 41/459 (8.9) |
| Midpole | 76/459 (16.6) |
| Lower pole | 161/459 (35.1) |
| Renal pelvis and PUJ | 60/459 (13.1) |
| Proximal ureter | 39/459 (8.5) |
| Mid ureter | 28/459 (6.1) |
| Distal ureter | 17/459 (3.7) |
| VUJ | 37/459 (8.1) |
| No. with ureteric stent present (%) | 32/459 (7.0) |
| Measures of stone burden: | |
| No. of stones | |
| 1 | 397/459 (86.5) |
| 2 | 40/459 (8.7) |
| 3 | 14/459 (3.1) |
| 4–6 | 8/459 (1.7) |
| Major axis length; mm* | 7.2 (5.6–9.6 [2.6–22.1]) |
| Minor axis length; mm* | 5.1 (4.0–6.6 [1.6–15.3]) |
| Vertical axis length; mm* | 7.1 (5.3–9.8 [0.2–29]) |
| Volume(s); mm3† | 137 (62–318 [6–2409]) |
| Total no. of pixels* | 69 (46–117 [12–533]) |
| CTTA variables: | |
| Mean HU* | 570 (430–700 [163–1217]) |
| Standard deviation of the HU* | 373 (267–453 [42–1069]) |
| MPP* | 572 (440–703 [163–1241]) |
| Entropy* | 4.2 (3.8–4.7 [2.5–5.8]) |
| Kurtosis* | −1.1 (−1.3–−0.8 [−1.6–1.86]) |
| Skewness* | 0.32 (0–0.53 [−1.14–1.3]) |
| No. SWL sessions | |
| 1 | 202/458 (44.1) |
| 2 | 134/458 (29.3) |
| 3 | 54/458 (11.8) |
| ≥4 | 69/458 (15) |
| No. follow-up imaging modality: | |
| X-ray | 289/459 (63) |
| US | 43/459 (9.4) |
| CT KUB | 127/459 (27.7) |
| No. days of follow-up after final SWL treatment | 124 (27–420 [0–1989]) |
| No. completely stone free (%) | 213/459 (46.4) |
| No. stone free with CIRFs | 282/459 (61.4) |
* Values were measured from the largest cross-sectional slice of the largest stone where more than one stone was treated. † Stone volume is the sum of individual stone volumes in cases with more than one stone. CIRFs, clinically insignificant residual fragments; CT KUB, computed tomography kidneys ureter bladder; CTTA, computed tomography texture analysis; HU, Hounsfield unit; PUJ, pelviureteric junction; MPP, mean of the positive pixels; SSD, skin-to-stone distance; SWL, extracorporeal shockwave lithotripsy; VUJ, vesicoureteric junction; US, ultrasound.
Univariate analysis of the pre-treatment factors, number of SWL sessions and follow-up imaging modality.
| Completely Stone Free Yes/No | Stone Free with CIRFs Yes/No | |||||||
|---|---|---|---|---|---|---|---|---|
| Yes | No | OR (95% CI) | p value | Yes | No | OR (95% CI) | p value | |
| No. treated cases | 213/459 (46.4) | 246/459 (53.6) | — | — | 282/459 (61.4) | 177/459 (38.6) | — | — |
| Gender: | ||||||||
| Male | 129/300 (43) | 171/300 (57) | 1 | — | 177/300 (59) | 123/300 (41) | 1 | — |
| Female | 84/159 (52.8) | 75/159 (47.2) | 1.49 (1.01, 2.29) | 0.049 | 105/159 (66) | 54/159 (34) | 1.35 (0.91, 2.02) | 0.159 |
| Patient age (yrs) | 51.0 (40–64) | 57 (47–67) | — | 0.0016 | 52.0 (41–65) | 57.0 (48–67) | — | 0.0026 |
| Side of stone: | ||||||||
| Left | 118/254 (46.5) | 136/254 (53.5) | 1 | — | 159/254 (62.6) | 95/254 (27.4) | 1 | — |
| Right | 95/205 (46.3) | 110/205 (53.7) | 1.00 (0.69, 1.44) | 1.000 | 123/205 (60) | 82/205 (40) | 0.89 (0.61, 1.31) | 0.630 |
| SSD; mm* | 109 (88–124) | 102 (83–121) | — | 0.0931 | 105 (86–120) | 108 (84–125) | — | 0.4843 |
| Renal vs. Ureteric stones: | ||||||||
| Kidney (all sites) | 137/338 (40.5) | 201/338 (59.5) | 1 | — | 199/338 (58.9) | 139/338 (41.1) | 1 | — |
| Ureter | 76/121 (62.8) | 45/121 (37.2) | 2.48 (1.62, 3.80) | <0.001 | 83/121 (68.6) | 45/121 (31.4) | 1.53 (0.98, 2.37) | 0.065 |
| No. stone location (%) compared to Ureteric Stones as the reference category: | ||||||||
| Upper and Midpole | 44/117 (37.6) | 73/117 (62.4) | 0.36 (0.21, 0.60) | <0.001 | 72/117 (61.5) | 45/117 (38.5) | 0.73 (0.43, 1.25) | 0.278 |
| Lower pole | 63/161 (39.1) | 98/161 (60.9) | 0.38 (0.23, 0.62) | <0.001 | 91/161 (56.5) | 70/161 (43.5) | 0.60 (0.36, 0.98) | 0.048 |
| Renal pelvis/PUJ | 30/60 (50) | 30/60 (50) | 0.59 (0.32, 1.11) | 0.111 | 36/60 (60) | 24/60 (40) | 0.69 (0.36, 1.31) | 0.318 |
| Ureteric stent present: | ||||||||
| No | 197/427 (46.1) | 230/427 (53.9) | 1 | — | 263/427 (61.6) | 164/427 (38.4) | 1 | — |
| Yes | 16/32 (50) | 16/32 (50) | 1.17 (0.57, 2.40) | 0.716 | 19/32 (59) | 13/32 (41) | 0.911 (0.44, 1.89) | 0.852 |
| Measures of stone burden: | ||||||||
| 1 Stone | 204/397 (51.4) | 193/397 (48.6) | 1 | — | 255/397 (64) | 142/397 (36) | 1 | — |
| 2 Stones | 6/40 (15) | 34/40 (85) | 0.17 (0.07, 0.41) | <0.001 | 19/40 (48) | 21/40 (52) | 0.50 (0.26, 0.97) | 0.041 |
| Major axis length; mm* | 6.7 (5.3–8.7) | 7.7 (6.1–10.8) | — | <0.0001 | 6.7 (5.3–8.7) | 8.3 (6.3–11.4) | — | <0.0001 |
| Minor axis length; mm* | 4.7 (3.8–6.1) | 5.4 (4.2–7.2) | — | 0.0001 | 4.7 (3.7–6.1) | 5.8 (4.4–7.7) | — | <0.0001 |
| Vertical axis length; mm* | 6.9 (5.0–9.2) | 7.4 (5.5–10.3) | — | 0.0176 | 6.7 (4.8–9.0) | 8.0 (6.0–11.1) | — | <0.0001 |
| Volume(s); mm3† | 109 (53–231) | 156 (76–403) | — | <0.0001 | 102 (51–241) | 201 (95–522) | — | <0.0001 |
| Total no. pixels* | 62 (37–101) | 82 (49–140) | — | <0.0001 | 62 (37–101) | 88 (53–153) | — | <0.0001 |
| Measures of stone density and heterogeneity (CTTA variables): | ||||||||
| Mean HU* | 543 (252–440) | 587 (455–726) | — | 0.0201 | 532 (413–664) | 605 (481–759) | — | 0.0001 |
| SD of the HU* | 364 (253–440) | 385 (300–458) | — | 0.0799 | 362 (250–440) | 391 (316–464) | — | 0.0129 |
| MPP* | 545 (416–680) | 589 (461–732) | — | 0.0202 | 535 (415–668) | 610 (489–761) | — | 0.0001 |
| Entropy* | 4.1 (3.6–4.6) | 4.3 (3.8–4.8) | — | <0.0001 | 4.1 (3.6–4.6) | 4.5 (3.9–4.9) | — | <0.0001 |
| Kurtosis* | −1.11 (−1.29– −0.89) | −1.11 (−1.30– −0.82) | — | 0.8733 | −1.09 (−1.25– −0.87) | −1.14 (−1.33– −0.82) | — | 0.1497 |
| Skewness* | 0.35 (0.08–0.52) | 0.28 (−0.11–0.54) | — | 0.0501 | 0.37 (−0.10–0.54) | 0.20 (−0.16–0.51) | — | 0.0002 |
| No. SWL sessions‡ | 1.0 (1–2) | 2.0 (1–4) | — | <0.0001 | 1.0 (1–2) | 2.0 (2–4) | — | <0.0001 |
| No. follow-up imaging modality: | ||||||||
| X-ray | 136/286 (47.6) | 150/286 (52.4) | 1 | — | 177/286 (61.9) | 109/286 (28.1) | 1 | — |
| US | 23/43 (53) | 20/43 (47) | 1.27 (0.66, 2.41) | 0.515 | 30/43 (70) | 13/43 (30) | 1.42 (0.71, 2.84) | 0.398 |
| CT KUB | 53/127 (42) | 74/127 (58) | 0.79 (0.52–1.20) | 0.286 | 72/127 (56.7) | 55/127 (43.3) | 0.81 (0.53–1.23) | 0.329 |
Values are median (IQR) or number (%). Continuous variables underwent the Mann–Whitney U test and therefore only the p-value is presented. Categorical variables underwent the chi-square test with odds ratios expressed relative to the reference group (usually chosen as group with the largest number of cases), with asymptotic confidence intervals and Fisher’s exact p values. Odds ratios and p-values have not been included for groups with less than 3 observations, when split by outcome. * Values were measured from the largest cross-sectional slice of the largest stone in cases where more than one stone was treated. † Stone volume is the sum of individual stone volumes in cases with more than one stone. CIRFs, clinically insignificant residual fragments; CT KUB, computed tomography kidneys ureter bladder; CTTA, computed tomography texture analysis; HU, Hounsfield unit; PUJ, pelviureteric junction; SD standard deviation; SSD, skin-to-stone distance; SWL, extracorporeal shockwave lithotripsy; US, ultrasound scan, VUJ, vesicoureteric junction.
Figure 1Forest plot of the log of the odds ratio and its 95% confidence interval for comparison of categorical predictor variables for the odds of having been ‘Completely Stone Free’ and ‘Stone Free with CIRFs’. The odds ratio refers to the first mentioned variable e.g. Female, and the second listed variable is the reference category e.g. Male. Therefore, Females have a slightly better odds of SWL success than Males. CIRFs, clinically insignificant residual fragments; CT KUB, computed tomography of the kidneys, ureter and bladder; PUJ, pelviureteric junction; US, ultrasound scan; VUJ, vesicoureteric junction.
Figure 2Volcano plot of the difference in median and the p-value of the Mann–Whitney U test for the comparison of continuous predictor variables between an SWL outcome of ‘Completely Stone Free’ and ‘Stone Free with CIRFs’. Variables labelled with * have had their median value divided by a factor of ten to allow representation of the ‘Difference in Median’ of all variables on the same scale axis. CIRFs, clinically insignificant residual fragments; HU, Hounsfield units; MPP, mean of the positive pixels; SSD, skin to stone distance.
Results of multivariable analysis using the LASSO method for the outcome of ‘Completely Stone Free’ showing chosen predictor variables and their corresponding coefficients.
| Variable | LASSO co-efficient |
|---|---|
| (Intercept) | 4.5 |
| Sex = Male | −0.582 |
| Age | −0.006 |
| Number of stones being treated | −0.817 |
| Size of the major axis (of the largest stone) | −0.176 |
| Size of vertical axis (of the largest stone) | 0.002 |
| Skin-to-stone distance | 0.004 |
| Stone location not in the VUJ | −0.751 |
|
| AUC = 0.66 |
|
| |
| Sensitivity = 59.8% | |
| Specificity = 56.3% |
Variables used as input into this model were those who had a significance of p > 0.1 on univariate analysis. The chosen predictor variables shown in this table with a negative coefficient indicate that higher values are linked to greater probability of unsuccessful SWL with outcome of ‘Not Completely Stone Free’. The LASSO co-efficient is not standardized and relates to the values of the variables and not the relative weight of influence of the variables. For example, for every one-year increase in age, there is a 0.006 percentage points decrease in the predicted probability of SWL success. The dataset was split into 2/3 training data to develop the predictive model whose performance is evaluated on the remaining 1/3 test data for ROC analysis. SWL, extracorporeal shockwave lithotripsy; LASSO, least absolute shrinkage and selection operator; ROC, receiver operator curve; VUJ, vesicoureteric junction.
Comparison of the performance of predictive models for the outcome of ‘Completely Stone Free’ or ‘Stone Free with CIRFs’ using three methods of multivariable analyses; first without the inclusion of CTTA variables and then with the addition of CTTA variables to the models.
| Outcome | |||||
|---|---|---|---|---|---|
| Completely Stone Free | Stone Free with CIRFs | ||||
| Patient and stone related variables | With the addition of CTTA variables | Patient and stone related variables | With the addition of CTTA variables | ||
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|
| ||||
| LASSO | Area under the curve on ROC analysis for discrimination performance | 0.66 | 0.64 | 0.67 | 0.67 |
| Hosmer-Lemeshow p-value | p < 0.001 | p < 0.001 | p < 0.001 | p < 0.001 | |
| Partial Least Squares | Q2 (quality assessment) statistic | 0.117 | 0.086 | — | — |
| Random Forests | Area under the curve on ROC analysis | 0.67 | 0.65 | — | — |
A significant Hosmer–Lemeshow p-value, as shown in this table, indicates the model is poorly calibrated. Partial Least Squares and Random Forests methods were not performed for the outcome of ‘Stone Free with CIRFs’. CIRFs, clinically insignificant residual fragments; CTTA, computed tomography texture analysis; LASSO, least absolute shrinkage and selection operator; ROC, receiver operator curve.
Figure 3Measurement method of skin-to-stone distance from the centre of the stone to the posterior skin, in line with the angle of the spinous process (yellow arrow).
Figure 4Example of a Region of Interest (ROI) automatically drawn (in blue) using CT textural analysis software (CTTA) to fit the largest cross-sectional area of the largest stone being treated by shockwave lithotripsy.