Literature DB >> 31527838

Liquid application method for time-resolved analyses by serial synchrotron crystallography.

Pedram Mehrabi1, Eike C Schulz1,2, Michael Agthe3, Sam Horrell3, Gleb Bourenkov4, David von Stetten4, Jan-Philipp Leimkohl5, Hendrik Schikora5, Thomas R Schneider4, Arwen R Pearson2,3, Friedjof Tellkamp5, R J Dwayne Miller6,7,8.   

Abstract

We introduce a liquid application method for time-resolved analyses (LAMA), an in situ mixing approach for serial crystallography. Picoliter-sized droplets are shot onto chip-mounted protein crystals, achieving near-full ligand occupancy within theoretical diffusion times. We demonstrate proof-of-principle binding of GlcNac to lysozyme, and resolve glucose binding and subsequent ring opening in a time-resolved study of xylose isomerase.

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Year:  2019        PMID： 31527838     DOI： 10.1038/s41592-019-0553-1

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  4 in total

1.  Production and Purification of Extracellular D-Xylose Isomerase from an Alkaliphilic, Thermophilic Bacillus sp.

Authors:  J Chauthaiwale; M Rao
Journal:  Appl Environ Microbiol       Date:  1994-12       Impact factor: 4.792

Review 2.  Molecular and industrial aspects of glucose isomerase.

Authors:  S H Bhosale; M B Rao; V V Deshpande
Journal:  Microbiol Rev       Date:  1996-06

3.  Subunit structure and amino acid composition of xylose isomerase from Streptomyces albus.

Authors:  R A Hogue-Angeletti
Journal:  J Biol Chem       Date:  1975-10-10       Impact factor: 5.157

4.  Lowering the pH optimum of D-xylose isomerase: the effect of mutations of the negatively charged residues.

Authors:  J Cha; C A Batt
Journal:  Mol Cells       Date:  1998-08-31       Impact factor: 5.034
  4 in total
  18 in total

1.  Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.

Authors:  Pierre Aller; Allen M Orville
Journal:  Methods Mol Biol       Date:  2021

2.  Co-flow injection for serial crystallography at X-ray free-electron lasers.

Authors:  Diandra Doppler; Mohammad T Rabbani; Romain Letrun; Jorvani Cruz Villarreal; Dai Hyun Kim; Sahir Gandhi; Ana Egatz-Gomez; Mukul Sonker; Joe Chen; Faisal H M Koua; Jayhow Yang; Mohamed Youssef; Victoria Mazalova; Saša Bajt; Megan L Shelby; Matt A Coleman; Max O Wiedorn; Juraj Knoska; Silvan Schön; Tokushi Sato; Mark S Hunter; Ahmad Hosseinizadeh; Christopher Kuptiz; Reza Nazari; Roberto C Alvarez; Konstantinos Karpos; Sahba Zaare; Zachary Dobson; Erin Discianno; Shangji Zhang; James D Zook; Johan Bielecki; Raphael de Wijn; Adam R Round; Patrik Vagovic; Marco Kloos; Mohammad Vakili; Gihan K Ketawala; Natasha E Stander; Tien L Olson; Katherine Morin; Jyotirmory Mondal; Jonathan Nguyen; José Domingo Meza-Aguilar; Gerdenis Kodis; Sara Vaiana; Jose M Martin-Garcia; Valerio Mariani; Peter Schwander; Marius Schmidt; Marc Messerschmidt; Abbas Ourmazd; Nadia Zatsepin; Uwe Weierstall; Barry D Bruce; Adrian P Mancuso; Thomas Grant; Anton Barty; Henry N Chapman; Matthias Frank; Raimund Fromme; John C H Spence; Sabine Botha; Petra Fromme; Richard A Kirian; Alexandra Ros
Journal:  J Appl Crystallogr       Date:  2022-02-01       Impact factor: 3.304

3.  Combination of an inject-and-transfer system for serial femtosecond crystallography.

Authors:  Keondo Lee; Jihan Kim; Sangwon Baek; Jaehyun Park; Sehan Park; Jong-Lam Lee; Wan Kyun Chung; Yunje Cho; Ki Hyun Nam
Journal:  J Appl Crystallogr       Date:  2022-07-05       Impact factor: 4.868

4.  Segmented flow generator for serial crystallography at the European X-ray free electron laser.

Authors:  Austin Echelmeier; Jorvani Cruz Villarreal; Marc Messerschmidt; Daihyun Kim; Jesse D Coe; Darren Thifault; Sabine Botha; Ana Egatz-Gomez; Sahir Gandhi; Gerrit Brehm; Chelsie E Conrad; Debra T Hansen; Caleb Madsen; Saša Bajt; J Domingo Meza-Aguilar; Dominik Oberthür; Max O Wiedorn; Holger Fleckenstein; Derek Mendez; Juraj Knoška; Jose M Martin-Garcia; Hao Hu; Stella Lisova; Aschkan Allahgholi; Yaroslav Gevorkov; Kartik Ayyer; Steve Aplin; Helen Mary Ginn; Heinz Graafsma; Andrew J Morgan; Dominic Greiffenberg; Alexander Klujev; Torsten Laurus; Jennifer Poehlsen; Ulrich Trunk; Davide Mezza; Bernd Schmidt; Manuela Kuhn; Raimund Fromme; Jolanta Sztuk-Dambietz; Natascha Raab; Steffen Hauf; Alessandro Silenzi; Thomas Michelat; Chen Xu; Cyril Danilevski; Andrea Parenti; Leonce Mekinda; Britta Weinhausen; Grant Mills; Patrik Vagovic; Yoonhee Kim; Henry Kirkwood; Richard Bean; Johan Bielecki; Stephan Stern; Klaus Giewekemeyer; Adam R Round; Joachim Schulz; Katerina Dörner; Thomas D Grant; Valerio Mariani; Anton Barty; Adrian P Mancuso; Uwe Weierstall; John C H Spence; Henry N Chapman; Nadia Zatsepin; Petra Fromme; Richard A Kirian; Alexandra Ros
Journal:  Nat Commun       Date:  2020-09-09       Impact factor: 14.919

5.  An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.

Authors:  Agata Butryn; Philipp S Simon; Pierre Aller; Philip Hinchliffe; Ramzi N Massad; Gabriel Leen; Catherine L Tooke; Isabel Bogacz; In-Sik Kim; Asmit Bhowmick; Aaron S Brewster; Nicholas E Devenish; Jürgen Brem; Jos J A G Kamps; Pauline A Lang; Patrick Rabe; Danny Axford; John H Beale; Bradley Davy; Ali Ebrahim; Julien Orlans; Selina L S Storm; Tiankun Zhou; Shigeki Owada; Rie Tanaka; Kensuke Tono; Gwyndaf Evans; Robin L Owen; Frances A Houle; Nicholas K Sauter; Christopher J Schofield; James Spencer; Vittal K Yachandra; Junko Yano; Jan F Kern; Allen M Orville
Journal:  Nat Commun       Date:  2021-07-22       Impact factor: 14.919

Review 6.  Macromolecular movies, storybooks written by nature.

Authors:  Marius Schmidt
Journal:  Biophys Rev       Date:  2021-11-03

7.  JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography.

Authors:  Filip Leonarski; Aldo Mozzanica; Martin Brückner; Carlos Lopez-Cuenca; Sophie Redford; Leonardo Sala; Andrej Babic; Heinrich Billich; Oliver Bunk; Bernd Schmitt; Meitian Wang
Journal:  Struct Dyn       Date:  2020-02-26       Impact factor: 2.920

8.  Nature of the copper-nitrosyl intermediates of copper nitrite reductases during catalysis.

Authors:  Michael A Hough; Jeanet Conradie; Richard W Strange; Svetlana V Antonyuk; Robert R Eady; Abhik Ghosh; S Samar Hasnain
Journal:  Chem Sci       Date:  2020-10-20       Impact factor: 9.825

9.  Polyimide mesh-based sample holder with irregular crystal mounting holes for fixed-target serial crystallography.

Authors:  Ki Hyun Nam; Jihan Kim; Yunje Cho
Journal:  Sci Rep       Date:  2021-06-23       Impact factor: 4.379

10.  The HARE chip for efficient time-resolved serial synchrotron crystallography.

Authors:  Pedram Mehrabi; Henrike M Müller-Werkmeister; Jan Philipp Leimkohl; Hendrik Schikora; Jelena Ninkovic; Silvia Krivokuca; Ladislav Andriček; Sascha W Epp; Darren Sherrell; Robin L Owen; Arwen R Pearson; Friedjof Tellkamp; Eike C Schulz; R J Dwayne Miller
Journal:  J Synchrotron Radiat       Date:  2020-02-27       Impact factor: 2.616
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