Literature DB >> 35153640

Co-flow injection for serial crystallography at X-ray free-electron lasers.

Diandra Doppler1,2, Mohammad T Rabbani1,2, Romain Letrun3, Jorvani Cruz Villarreal1,2, Dai Hyun Kim1,2, Sahir Gandhi1,2, Ana Egatz-Gomez1,2, Mukul Sonker1,2, Joe Chen4, Faisal H M Koua5, Jayhow Yang2, Mohamed Youssef5, Victoria Mazalova5, Saša Bajt6,7, Megan L Shelby8, Matt A Coleman8, Max O Wiedorn5,6,9, Juraj Knoska5, Silvan Schön5, Tokushi Sato3, Mark S Hunter10, Ahmad Hosseinizadeh11, Christopher Kuptiz10, Reza Nazari2,4, Roberto C Alvarez2,4, Konstantinos Karpos2,4, Sahba Zaare2,4, Zachary Dobson1,2, Erin Discianno2, Shangji Zhang1,2, James D Zook1,2, Johan Bielecki3, Raphael de Wijn3, Adam R Round3,12, Patrik Vagovic3,5, Marco Kloos3, Mohammad Vakili3, Gihan K Ketawala1,2, Natasha E Stander1,2, Tien L Olson1,2, Katherine Morin2, Jyotirmory Mondal13, Jonathan Nguyen1,2, José Domingo Meza-Aguilar2,3, Gerdenis Kodis1,2,4, Sara Vaiana4, Jose M Martin-Garcia2,14, Valerio Mariani5, Peter Schwander11, Marius Schmidt11, Marc Messerschmidt1,2, Abbas Ourmazd11, Nadia Zatsepin2,4,15, Uwe Weierstall2,4, Barry D Bruce13, Adrian P Mancuso3,15, Thomas Grant16, Anton Barty5,7,17, Henry N Chapman5,6,9, Matthias Frank8, Raimund Fromme1,2, John C H Spence2,4, Sabine Botha2,4, Petra Fromme1,2, Richard A Kirian2,4, Alexandra Ros1,2.   

Abstract

Serial femtosecond crystallography (SFX) is a powerful technique that exploits X-ray free-electron lasers to determine the structure of macro-molecules at room temperature. Despite the impressive exposition of structural details with this novel crystallographic approach, the methods currently available to introduce crystals into the path of the X-ray beam sometimes exhibit serious drawbacks. Samples requiring liquid injection of crystal slurries consume large quantities of crystals (at times up to a gram of protein per data set), may not be compatible with vacuum configurations on beamlines or provide a high background due to additional sheathing liquids present during the injection. Proposed and characterized here is the use of an immiscible inert oil phase to supplement the flow of sample in a hybrid microfluidic 3D-printed co-flow device. Co-flow generation is reported with sample and oil phases flowing in parallel, resulting in stable injection conditions for two different resin materials experimentally. A numerical model is presented that adequately predicts these flow-rate conditions. The co-flow generating devices reduce crystal clogging effects, have the potential to conserve protein crystal samples up to 95% and will allow degradation-free light-induced time-resolved SFX. © Diandra Doppler et al. 2022.

Entities:  

Keywords:  3D printing; X-ray free-electron lasers; XFELs; microfluidic devices; sample consumption; serial crystallography; viscous media

Year:  2022        PMID: 35153640      PMCID: PMC8805165          DOI: 10.1107/S1600576721011079

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   3.304


  46 in total

1.  Liquid application method for time-resolved analyses by serial synchrotron crystallography.

Authors:  Pedram Mehrabi; Eike C Schulz; Michael Agthe; Sam Horrell; Gleb Bourenkov; David von Stetten; Jan-Philipp Leimkohl; Hendrik Schikora; Thomas R Schneider; Arwen R Pearson; Friedjof Tellkamp; R J Dwayne Miller
Journal:  Nat Methods       Date:  2019-09-16       Impact factor: 28.547

2.  Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser.

Authors:  Christopher Kupitz; Shibom Basu; Ingo Grotjohann; Raimund Fromme; Nadia A Zatsepin; Kimberly N Rendek; Mark S Hunter; Robert L Shoeman; Thomas A White; Dingjie Wang; Daniel James; Jay-How Yang; Danielle E Cobb; Brenda Reeder; Raymond G Sierra; Haiguang Liu; Anton Barty; Andrew L Aquila; Daniel Deponte; Richard A Kirian; Sadia Bari; Jesse J Bergkamp; Kenneth R Beyerlein; Michael J Bogan; Carl Caleman; Tzu-Chiao Chao; Chelsie E Conrad; Katherine M Davis; Holger Fleckenstein; Lorenzo Galli; Stefan P Hau-Riege; Stephan Kassemeyer; Hartawan Laksmono; Mengning Liang; Lukas Lomb; Stefano Marchesini; Andrew V Martin; Marc Messerschmidt; Despina Milathianaki; Karol Nass; Alexandra Ros; Shatabdi Roy-Chowdhury; Kevin Schmidt; Marvin Seibert; Jan Steinbrener; Francesco Stellato; Lifen Yan; Chunhong Yoon; Thomas A Moore; Ana L Moore; Yulia Pushkar; Garth J Williams; Sébastien Boutet; R Bruce Doak; Uwe Weierstall; Matthias Frank; Henry N Chapman; John C H Spence; Petra Fromme
Journal:  Nature       Date:  2014-07-09       Impact factor: 49.962

3.  Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography.

Authors:  Uwe Weierstall; Daniel James; Chong Wang; Thomas A White; Dingjie Wang; Wei Liu; John C H Spence; R Bruce Doak; Garrett Nelson; Petra Fromme; Raimund Fromme; Ingo Grotjohann; Christopher Kupitz; Nadia A Zatsepin; Haiguang Liu; Shibom Basu; Daniel Wacker; Gye Won Han; Vsevolod Katritch; Sébastien Boutet; Marc Messerschmidt; Garth J Williams; Jason E Koglin; M Marvin Seibert; Markus Klinker; Cornelius Gati; Robert L Shoeman; Anton Barty; Henry N Chapman; Richard A Kirian; Kenneth R Beyerlein; Raymond C Stevens; Dianfan Li; Syed T A Shah; Nicole Howe; Martin Caffrey; Vadim Cherezov
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

Review 4.  Serial femtosecond crystallography: A revolution in structural biology.

Authors:  Jose M Martin-Garcia; Chelsie E Conrad; Jesse Coe; Shatabdi Roy-Chowdhury; Petra Fromme
Journal:  Arch Biochem Biophys       Date:  2016-04-30       Impact factor: 4.013

5.  Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser.

Authors:  Yanyong Kang; X Edward Zhou; Xiang Gao; Yuanzheng He; Wei Liu; Andrii Ishchenko; Anton Barty; Thomas A White; Oleksandr Yefanov; Gye Won Han; Qingping Xu; Parker W de Waal; Jiyuan Ke; M H Eileen Tan; Chenghai Zhang; Arne Moeller; Graham M West; Bruce D Pascal; Ned Van Eps; Lydia N Caro; Sergey A Vishnivetskiy; Regina J Lee; Kelly M Suino-Powell; Xin Gu; Kuntal Pal; Jinming Ma; Xiaoyong Zhi; Sébastien Boutet; Garth J Williams; Marc Messerschmidt; Cornelius Gati; Nadia A Zatsepin; Dingjie Wang; Daniel James; Shibom Basu; Shatabdi Roy-Chowdhury; Chelsie E Conrad; Jesse Coe; Haiguang Liu; Stella Lisova; Christopher Kupitz; Ingo Grotjohann; Raimund Fromme; Yi Jiang; Minjia Tan; Huaiyu Yang; Jun Li; Meitian Wang; Zhong Zheng; Dianfan Li; Nicole Howe; Yingming Zhao; Jörg Standfuss; Kay Diederichs; Yuhui Dong; Clinton S Potter; Bridget Carragher; Martin Caffrey; Hualiang Jiang; Henry N Chapman; John C H Spence; Petra Fromme; Uwe Weierstall; Oliver P Ernst; Vsevolod Katritch; Vsevolod V Gurevich; Patrick R Griffin; Wayne L Hubbell; Raymond C Stevens; Vadim Cherezov; Karsten Melcher; H Eric Xu
Journal:  Nature       Date:  2015-07-22       Impact factor: 49.962

6.  Structural enzymology using X-ray free electron lasers.

Authors:  Christopher Kupitz; Jose L Olmos; Mark Holl; Lee Tremblay; Kanupriya Pande; Suraj Pandey; Dominik Oberthür; Mark Hunter; Mengning Liang; Andrew Aquila; Jason Tenboer; George Calvey; Andrea Katz; Yujie Chen; Max O Wiedorn; Juraj Knoska; Alke Meents; Valerio Majriani; Tyler Norwood; Ishwor Poudyal; Thomas Grant; Mitchell D Miller; Weijun Xu; Aleksandra Tolstikova; Andrew Morgan; Markus Metz; Jose M Martin-Garcia; James D Zook; Shatabdi Roy-Chowdhury; Jesse Coe; Nirupa Nagaratnam; Domingo Meza; Raimund Fromme; Shibom Basu; Matthias Frank; Thomas White; Anton Barty; Sasa Bajt; Oleksandr Yefanov; Henry N Chapman; Nadia Zatsepin; Garrett Nelson; Uwe Weierstall; John Spence; Peter Schwander; Lois Pollack; Petra Fromme; Abbas Ourmazd; George N Phillips; Marius Schmidt
Journal:  Struct Dyn       Date:  2016-12-15       Impact factor: 2.920

7.  Double-flow focused liquid injector for efficient serial femtosecond crystallography.

Authors:  Dominik Oberthuer; Juraj Knoška; Max O Wiedorn; Kenneth R Beyerlein; David A Bushnell; Elena G Kovaleva; Michael Heymann; Lars Gumprecht; Richard A Kirian; Anton Barty; Valerio Mariani; Aleksandra Tolstikova; Luigi Adriano; Salah Awel; Miriam Barthelmess; Katerina Dörner; P Lourdu Xavier; Oleksandr Yefanov; Daniel R James; Garrett Nelson; Dingjie Wang; George Calvey; Yujie Chen; Andrea Schmidt; Michael Szczepek; Stefan Frielingsdorf; Oliver Lenz; Edward Snell; Philip J Robinson; Božidar Šarler; Grega Belšak; Marjan Maček; Fabian Wilde; Andrew Aquila; Sébastien Boutet; Mengning Liang; Mark S Hunter; Patrick Scheerer; John D Lipscomb; Uwe Weierstall; Roger D Kornberg; John C H Spence; Lois Pollack; Henry N Chapman; Saša Bajt
Journal:  Sci Rep       Date:  2017-03-16       Impact factor: 4.379

8.  Enzyme intermediates captured "on the fly" by mix-and-inject serial crystallography.

Authors:  Jose L Olmos; Suraj Pandey; Jose M Martin-Garcia; George Calvey; Andrea Katz; Juraj Knoska; Christopher Kupitz; Mark S Hunter; Mengning Liang; Dominik Oberthuer; Oleksandr Yefanov; Max Wiedorn; Michael Heyman; Mark Holl; Kanupriya Pande; Anton Barty; Mitchell D Miller; Stephan Stern; Shatabdi Roy-Chowdhury; Jesse Coe; Nirupa Nagaratnam; James Zook; Jacob Verburgt; Tyler Norwood; Ishwor Poudyal; David Xu; Jason Koglin; Matthew H Seaberg; Yun Zhao; Saša Bajt; Thomas Grant; Valerio Mariani; Garrett Nelson; Ganesh Subramanian; Euiyoung Bae; Raimund Fromme; Russell Fung; Peter Schwander; Matthias Frank; Thomas A White; Uwe Weierstall; Nadia Zatsepin; John Spence; Petra Fromme; Henry N Chapman; Lois Pollack; Lee Tremblay; Abbas Ourmazd; George N Phillips; Marius Schmidt
Journal:  BMC Biol       Date:  2018-05-31       Impact factor: 7.431

9.  Membrane protein megahertz crystallography at the European XFEL.

Authors:  Chris Gisriel; Jesse Coe; Romain Letrun; Oleksandr M Yefanov; Cesar Luna-Chavez; Natasha E Stander; Stella Lisova; Valerio Mariani; Manuela Kuhn; Steve Aplin; Thomas D Grant; Katerina Dörner; Tokushi Sato; Austin Echelmeier; Jorvani Cruz Villarreal; Mark S Hunter; Max O Wiedorn; Juraj Knoska; Victoria Mazalova; Shatabdi Roy-Chowdhury; Jay-How Yang; Alex Jones; Richard Bean; Johan Bielecki; Yoonhee Kim; Grant Mills; Britta Weinhausen; Jose D Meza; Nasser Al-Qudami; Saša Bajt; Gerrit Brehm; Sabine Botha; Djelloul Boukhelef; Sandor Brockhauser; Barry D Bruce; Matthew A Coleman; Cyril Danilevski; Erin Discianno; Zachary Dobson; Hans Fangohr; Jose M Martin-Garcia; Yaroslav Gevorkov; Steffen Hauf; Ahmad Hosseinizadeh; Friederike Januschek; Gihan K Ketawala; Christopher Kupitz; Luis Maia; Maurizio Manetti; Marc Messerschmidt; Thomas Michelat; Jyotirmoy Mondal; Abbas Ourmazd; Gianpietro Previtali; Iosifina Sarrou; Silvan Schön; Peter Schwander; Megan L Shelby; Alessandro Silenzi; Jolanta Sztuk-Dambietz; Janusz Szuba; Monica Turcato; Thomas A White; Krzysztof Wrona; Chen Xu; Mohamed H Abdellatif; James D Zook; John C H Spence; Henry N Chapman; Anton Barty; Richard A Kirian; Matthias Frank; Alexandra Ros; Marius Schmidt; Raimund Fromme; Adrian P Mancuso; Petra Fromme; Nadia A Zatsepin
Journal:  Nat Commun       Date:  2019-11-04       Impact factor: 14.919

10.  Mixing injector enables time-resolved crystallography with high hit rate at X-ray free electron lasers.

Authors:  George D Calvey; Andrea M Katz; Chris B Schaffer; Lois Pollack
Journal:  Struct Dyn       Date:  2016-08-29       Impact factor: 2.920

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  3 in total

1.  3D printed devices and infrastructure for liquid sample delivery at the European XFEL.

Authors:  Mohammad Vakili; Johan Bielecki; Juraj Knoška; Florian Otte; Huijong Han; Marco Kloos; Robin Schubert; Elisa Delmas; Grant Mills; Raphael de Wijn; Romain Letrun; Simon Dold; Richard Bean; Adam Round; Yoonhee Kim; Frederico A Lima; Katerina Dörner; Joana Valerio; Michael Heymann; Adrian P Mancuso; Joachim Schulz
Journal:  J Synchrotron Radiat       Date:  2022-02-15       Impact factor: 2.616

2.  Acoustic Focusing of Protein Crystals for In-Line Monitoring and Up-Concentration during Serial Crystallography.

Authors:  Björn Hammarström; Thomas J Lane; Hazal Batili; Raymond Sierra; Martin Wiklund; Jonas A Sellberg
Journal:  Anal Chem       Date:  2022-09-02       Impact factor: 8.008

3.  Towards real-time analysis of liquid jet alignment in serial femtosecond crystallography.

Authors:  Jaydeep Patel; Adam Round; Johan Bielecki; Katerina Doerner; Henry Kirkwood; Romain Letrun; Joachim Schulz; Marcin Sikorski; Mohammad Vakili; Raphael de Wijn; Andrew Peele; Adrian P Mancuso; Brian Ab Bey
Journal:  J Appl Crystallogr       Date:  2022-08-01       Impact factor: 4.868

  3 in total

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