Literature DB >> 35979068

Combination of an inject-and-transfer system for serial femtosecond crystallography.

Keondo Lee1, Jihan Kim2, Sangwon Baek3, Jaehyun Park4,5, Sehan Park4, Jong-Lam Lee3, Wan Kyun Chung1, Yunje Cho2, Ki Hyun Nam2,6.   

Abstract

Serial femtosecond crystallography (SFX) enables the determination of room-temperature crystal structures of macromolecules with minimized radiation damage and provides time-resolved molecular dynamics by pump-probe or mix-and-inject experiments. In SFX, a variety of sample delivery methods with unique advantages have been developed and applied. The combination of existing sample delivery methods can enable a new approach to SFX data collection that combines the advantages of the individual methods. This study introduces a combined inject-and-transfer system (BITS) method for sample delivery in SFX experiments: a hybrid injection and fixed-target scanning method. BITS allows for solution samples to be reliably deposited on ultraviolet ozone (UVO)-treated polyimide films, at a minimum flow rate of 0.5 nl min-1, in both vertical and horizontal scanning modes. To utilize BITS in SFX experiments, lysozyme crystal samples were embedded in a viscous lard medium and injected at flow rates of 50-100 nl min-1 through a syringe needle onto a UVO-treated polyimide film, which was mounted on a fixed-target scan stage. The crystal samples deposited on the film were raster scanned with an X-ray free electron laser using a motion stage in both horizontal and vertical directions. Using the BITS method, the room-temperature structure of lysozyme was successfully determined at a resolution of 2.1 Å, and thus BITS could be utilized in future SFX experiments. © Keondo Lee et al. 2022.

Entities:  

Keywords:  fixed-target scanning; injection; sample delivery; serial crystallography; viscous media

Year:  2022        PMID: 35979068      PMCID: PMC9348887          DOI: 10.1107/S1600576722005556

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   4.868


  49 in total

1.  Goniometer-based femtosecond crystallography with X-ray free electron lasers.

Authors:  Aina E Cohen; S Michael Soltis; Ana González; Laura Aguila; Roberto Alonso-Mori; Christopher O Barnes; Elizabeth L Baxter; Winnie Brehmer; Aaron S Brewster; Axel T Brunger; Guillermo Calero; Joseph F Chang; Matthieu Chollet; Paul Ehrensberger; Thomas L Eriksson; Yiping Feng; Johan Hattne; Britt Hedman; Michael Hollenbeck; James M Holton; Stephen Keable; Brian K Kobilka; Elena G Kovaleva; Andrew C Kruse; Henrik T Lemke; Guowu Lin; Artem Y Lyubimov; Aashish Manglik; Irimpan I Mathews; Scott E McPhillips; Silke Nelson; John W Peters; Nicholas K Sauter; Clyde A Smith; Jinhu Song; Hilary P Stevenson; Yingssu Tsai; Monarin Uervirojnangkoorn; Vladimir Vinetsky; Soichi Wakatsuki; William I Weis; Oleg A Zadvornyy; Oliver B Zeldin; Diling Zhu; Keith O Hodgson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-31       Impact factor: 11.205

2.  Liquid application method for time-resolved analyses by serial synchrotron crystallography.

Authors:  Pedram Mehrabi; Eike C Schulz; Michael Agthe; Sam Horrell; Gleb Bourenkov; David von Stetten; Jan-Philipp Leimkohl; Hendrik Schikora; Thomas R Schneider; Arwen R Pearson; Friedjof Tellkamp; R J Dwayne Miller
Journal:  Nat Methods       Date:  2019-09-16       Impact factor: 28.547

3.  XFEL serial crystallography reveals the room temperature structure of methyl-coenzyme M reductase.

Authors:  Christopher J Ohmer; Medhanjali Dasgupta; Anjali Patwardhan; Isabel Bogacz; Corey Kaminsky; Margaret D Doyle; Percival Yang-Ting Chen; Stephen M Keable; Hiroki Makita; Philipp S Simon; Ramzi Massad; Thomas Fransson; Ruchira Chatterjee; Asmit Bhowmick; Daniel W Paley; Nigel W Moriarty; Aaron S Brewster; Leland B Gee; Roberto Alonso-Mori; Frank Moss; Franklin D Fuller; Alexander Batyuk; Nicholas K Sauter; Uwe Bergmann; Catherine L Drennan; Vittal K Yachandra; Junko Yano; Jan F Kern; Stephen W Ragsdale
Journal:  J Inorg Biochem       Date:  2022-02-17       Impact factor: 4.155

4.  Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography.

Authors:  Uwe Weierstall; Daniel James; Chong Wang; Thomas A White; Dingjie Wang; Wei Liu; John C H Spence; R Bruce Doak; Garrett Nelson; Petra Fromme; Raimund Fromme; Ingo Grotjohann; Christopher Kupitz; Nadia A Zatsepin; Haiguang Liu; Shibom Basu; Daniel Wacker; Gye Won Han; Vsevolod Katritch; Sébastien Boutet; Marc Messerschmidt; Garth J Williams; Jason E Koglin; M Marvin Seibert; Markus Klinker; Cornelius Gati; Robert L Shoeman; Anton Barty; Henry N Chapman; Richard A Kirian; Kenneth R Beyerlein; Raymond C Stevens; Dianfan Li; Syed T A Shah; Nicole Howe; Martin Caffrey; Vadim Cherezov
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

5.  Cheetah: software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data.

Authors:  Anton Barty; Richard A Kirian; Filipe R N C Maia; Max Hantke; Chun Hong Yoon; Thomas A White; Henry Chapman
Journal:  J Appl Crystallogr       Date:  2014-05-29       Impact factor: 3.304

6.  A modular and compact portable mini-endstation for high-precision, high-speed fixed target serial crystallography at FEL and synchrotron sources.

Authors:  Darren A Sherrell; Andrew J Foster; Lee Hudson; Brian Nutter; James O'Hea; Silke Nelson; Olivier Paré-Labrosse; Saeed Oghbaey; R J Dwayne Miller; Robin L Owen
Journal:  J Synchrotron Radiat       Date:  2015-10-06       Impact factor: 2.616

7.  Nylon mesh-based sample holder for fixed-target serial femtosecond crystallography.

Authors:  Donghyeon Lee; Sangwon Baek; Jaehyun Park; Keondo Lee; Jangwoo Kim; Sang Jae Lee; Wan Kyun Chung; Jong-Lam Lee; Yunje Cho; Ki Hyun Nam
Journal:  Sci Rep       Date:  2019-05-06       Impact factor: 4.379

8.  Shortening injection matrix for serial crystallography.

Authors:  Ki Hyun Nam
Journal:  Sci Rep       Date:  2020-01-09       Impact factor: 4.379

9.  Application of a high-throughput microcrystal delivery system to serial femtosecond crystallography.

Authors:  Donghyeon Lee; Sehan Park; Keondo Lee; Jangwoo Kim; Gisu Park; Ki Hyun Nam; Sangwon Baek; Wan Kyun Chung; Jong-Lam Lee; Yunje Cho; Jaehyun Park
Journal:  J Appl Crystallogr       Date:  2020-03-25       Impact factor: 3.304

10.  3D-MiXD: 3D-printed X-ray-compatible microfluidic devices for rapid, low-consumption serial synchrotron crystallography data collection in flow.

Authors:  Diana C F Monteiro; David von Stetten; Claudia Stohrer; Marta Sans; Arwen R Pearson; Gianluca Santoni; Peter van der Linden; Martin Trebbin
Journal:  IUCrJ       Date:  2020-01-16       Impact factor: 4.769

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