Literature DB >> 31510428

Fourier light-field microscopy.

Changliang Guo, Wenhao Liu, Xuanwen Hua, Haoyu Li, Shu Jia.   

Abstract

Observing the various anatomical and functional information that spans many spatiotemporal scales with high resolution provides deep understandings of the fundamentals of biological systems. Light-field microscopy (LFM) has recently emerged as a scanning-free, scalable method that allows for high-speed, volumetric imaging ranging from single-cell specimens to the mammalian brain. However, the prohibitive reconstruction artifacts and severe computational cost have thus far limited broader applications of LFM. To address the challenge, in this work, we report Fourier LFM (FLFM), a system that processes the light-field information through the Fourier domain. We established a complete theoretical and algorithmic framework that describes light propagation, image formation and system characterization of FLFM. Compared with conventional LFM, FLFM fundamentally mitigates the artifacts, allowing high-resolution imaging across a two- to three-fold extended depth. In addition, the system substantially reduces the reconstruction time by roughly two orders of magnitude. FLFM was validated by high-resolution, artifact-free imaging of various caliber and biological samples. Furthermore, we proposed a generic design principle for FLFM, as a highly scalable method to meet broader imaging needs across various spatial levels. We anticipate FLFM to be a particularly powerful tool for imaging diverse phenotypic and functional information, spanning broad molecular, cellular and tissue systems.

Entities:  

Year:  2019        PMID: 31510428      PMCID: PMC6825611          DOI: 10.1364/OE.27.025573

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  11 in total

1.  Camera array based light field microscopy.

Authors:  Xing Lin; Jiamin Wu; Guoan Zheng; Qionghai Dai
Journal:  Biomed Opt Express       Date:  2015-08-03       Impact factor: 3.732

2.  Wave optics theory and 3-D deconvolution for the light field microscope.

Authors:  Michael Broxton; Logan Grosenick; Samuel Yang; Noy Cohen; Aaron Andalman; Karl Deisseroth; Marc Levoy
Journal:  Opt Express       Date:  2013-10-21       Impact factor: 3.894

Review 3.  Recording and controlling the 4D light field in a microscope using microlens arrays.

Authors:  M Levoy; Z Zhang; I McDowall
Journal:  J Microsc       Date:  2009-08       Impact factor: 1.758

4.  Enhancing the performance of the light field microscope using wavefront coding.

Authors:  Noy Cohen; Samuel Yang; Aaron Andalman; Michael Broxton; Logan Grosenick; Karl Deisseroth; Mark Horowitz; Marc Levoy
Journal:  Opt Express       Date:  2014-10-06       Impact factor: 3.894

5.  Fast, volumetric live-cell imaging using high-resolution light-field microscopy.

Authors:  Haoyu Li; Changliang Guo; Deborah Kim-Holzapfel; Weiyi Li; Yelena Altshuller; Bryce Schroeder; Wenhao Liu; Yizhi Meng; Jarrod B French; Ken-Ichi Takamaru; Michael A Frohman; Shu Jia
Journal:  Biomed Opt Express       Date:  2018-12-04       Impact factor: 3.732

6.  Video rate volumetric Ca2+ imaging across cortex using seeded iterative demixing (SID) microscopy.

Authors:  Tobias Nöbauer; Oliver Skocek; Alejandro J Pernía-Andrade; Lukas Weilguny; Francisca Martínez Traub; Maxim I Molodtsov; Alipasha Vaziri
Journal:  Nat Methods       Date:  2017-06-26       Impact factor: 28.547

7.  Resolution improvements in integral microscopy with Fourier plane recording.

Authors:  A Llavador; J Sola-Pikabea; G Saavedra; B Javidi; M Martínez-Corral
Journal:  Opt Express       Date:  2016-09-05       Impact factor: 3.894

8.  FIMic: design for ultimate 3D-integral microscopy of in-vivo biological samples.

Authors:  G Scrofani; J Sola-Pikabea; A Llavador; E Sanchez-Ortiga; J C Barreiro; G Saavedra; J Garcia-Sucerquia; M Martínez-Corral
Journal:  Biomed Opt Express       Date:  2017-12-22       Impact factor: 3.732

9.  Rapid whole brain imaging of neural activity in freely behaving larval zebrafish (Danio rerio).

Authors:  Lin Cong; Zeguan Wang; Yuming Chai; Wei Hang; Chunfeng Shang; Wenbin Yang; Lu Bai; Jiulin Du; Kai Wang; Quan Wen
Journal:  Elife       Date:  2017-09-20       Impact factor: 8.140

10.  Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy.

Authors:  Robert Prevedel; Young-Gyu Yoon; Maximilian Hoffmann; Nikita Pak; Gordon Wetzstein; Saul Kato; Tina Schrödel; Ramesh Raskar; Manuel Zimmer; Edward S Boyden; Alipasha Vaziri
Journal:  Nat Methods       Date:  2014-05-18       Impact factor: 28.547

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  21 in total

1.  Snapshot projection optical tomography.

Authors:  Yongjin Sung
Journal:  Phys Rev Appl       Date:  2020-05-20       Impact factor: 4.985

2.  High-resolution Fourier light-field microscopy for volumetric multi-color live-cell imaging.

Authors:  Xuanwen Hua; Wenhao Liu; Shu Jia
Journal:  Optica       Date:  2021-04-29       Impact factor: 11.104

3.  Design of a high-resolution light field miniscope for volumetric imaging in scattering tissue.

Authors:  Yanqin Chen; Bo Xiong; Yujia Xue; Xin Jin; Joseph Greene; Lei Tian
Journal:  Biomed Opt Express       Date:  2020-02-28       Impact factor: 3.732

4.  Imaging volumetric dynamics at high speed in mouse and zebrafish brain with confocal light field microscopy.

Authors:  Zhenkun Zhang; Lu Bai; Lin Cong; Peng Yu; Tianlei Zhang; Wanzhuo Shi; Funing Li; Jiulin Du; Kai Wang
Journal:  Nat Biotechnol       Date:  2020-08-10       Impact factor: 54.908

Review 5.  A practical guide to scanning light-field microscopy with digital adaptive optics.

Authors:  Zhi Lu; Yeyi Cai; Yixin Nie; Yuxin Yang; Jiamin Wu; Qionghai Dai
Journal:  Nat Protoc       Date:  2022-06-29       Impact factor: 17.021

6.  GEOMScope: Large Field-of-view 3D Lensless Microscopy with Low Computational Complexity.

Authors:  Feng Tian; Junjie Hu; Weijian Yang
Journal:  Laser Photon Rev       Date:  2021-06-27       Impact factor: 10.947

Review 7.  Volumetric Imaging of Neural Activity by Light Field Microscopy.

Authors:  Lu Bai; Zhenkun Zhang; Lichen Ye; Lin Cong; Yuchen Zhao; Tianlei Zhang; Ziqi Shi; Kai Wang
Journal:  Neurosci Bull       Date:  2022-08-08       Impact factor: 5.271

8.  Remote Focusing in a Temporal Focusing Microscope.

Authors:  Michael E Durst; Samuel Yurak; Joseph Moscatelli; Isabel Linhares; Ruben Vargas
Journal:  OSA Contin       Date:  2021-10-27

9.  Fourier light-field imaging of human organoids with a hybrid point-spread function.

Authors:  Wenhao Liu; Ge-Ah R Kim; Shuichi Takayama; Shu Jia
Journal:  Biosens Bioelectron       Date:  2022-03-26       Impact factor: 12.545

10.  An experimental method to characterize the relationship between aperture image and ray directions in microscope optics.

Authors:  Mai Thi Tran; Rudolf Oldenbourg
Journal:  Microsc Res Tech       Date:  2020-10-21       Impact factor: 2.769

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