Literature DB >> 28930070

Rapid whole brain imaging of neural activity in freely behaving larval zebrafish (Danio rerio).

Lin Cong1, Zeguan Wang2, Yuming Chai2, Wei Hang1, Chunfeng Shang1, Wenbin Yang2, Lu Bai1,3, Jiulin Du1,3, Kai Wang1,3, Quan Wen2.   

Abstract

The internal brain dynamics that link sensation and action are arguably better studied during natural animal behaviors. Here, we report on a novel volume imaging and 3D tracking technique that monitors whole brain neural activity in freely swimming larval zebrafish (Danio rerio). We demonstrated the capability of our system through functional imaging of neural activity during visually evoked and prey capture behaviors in larval zebrafish.

Entities:  

Keywords:  3D tracking system; freely behaving larval zebrafish; light field microscope; neuroscience; prey capture behavior; whole brain Imaging; zebrafish

Mesh:

Year:  2017        PMID: 28930070      PMCID: PMC5644961          DOI: 10.7554/eLife.28158

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  48 in total

1.  Brain-wide neuronal dynamics during motor adaptation in zebrafish.

Authors:  Misha B Ahrens; Jennifer M Li; Michael B Orger; Drew N Robson; Alexander F Schier; Florian Engert; Ruben Portugues
Journal:  Nature       Date:  2012-05-09       Impact factor: 49.962

2.  Multimodal fast optical interrogation of neural circuitry.

Authors:  Feng Zhang; Li-Ping Wang; Martin Brauner; Jana F Liewald; Kenneth Kay; Natalie Watzke; Phillip G Wood; Ernst Bamberg; Georg Nagel; Alexander Gottschalk; Karl Deisseroth
Journal:  Nature       Date:  2007-04-05       Impact factor: 49.962

3.  Real-time visualization of neuronal activity during perception.

Authors:  Akira Muto; Masamichi Ohkura; Gembu Abe; Junichi Nakai; Koichi Kawakami
Journal:  Curr Biol       Date:  2013-01-31       Impact factor: 10.834

4.  How to track bacteria.

Authors:  H C Berg
Journal:  Rev Sci Instrum       Date:  1971-06       Impact factor: 1.523

5.  Modulation of visual responses by behavioral state in mouse visual cortex.

Authors:  Cristopher M Niell; Michael P Stryker
Journal:  Neuron       Date:  2010-02-25       Impact factor: 17.173

6.  Imaging large-scale neural activity with cellular resolution in awake, mobile mice.

Authors:  Daniel A Dombeck; Anton N Khabbaz; Forrest Collman; Thomas L Adelman; David W Tank
Journal:  Neuron       Date:  2007-10-04       Impact factor: 17.173

7.  Walking modulates speed sensitivity in Drosophila motion vision.

Authors:  M Eugenia Chiappe; Johannes D Seelig; Michael B Reiser; Vivek Jayaraman
Journal:  Curr Biol       Date:  2010-07-22       Impact factor: 10.834

8.  High-fidelity optical reporting of neuronal electrical activity with an ultrafast fluorescent voltage sensor.

Authors:  François St-Pierre; Jesse D Marshall; Ying Yang; Yiyang Gong; Mark J Schnitzer; Michael Z Lin
Journal:  Nat Neurosci       Date:  2014-04-22       Impact factor: 24.884

9.  Visually driven chaining of elementary swim patterns into a goal-directed motor sequence: a virtual reality study of zebrafish prey capture.

Authors:  Chintan A Trivedi; Johann H Bollmann
Journal:  Front Neural Circuits       Date:  2013-05-10       Impact factor: 3.492

10.  Sparse representation of sounds in the unanesthetized auditory cortex.

Authors:  Tomás Hromádka; Michael R Deweese; Anthony M Zador
Journal:  PLoS Biol       Date:  2008-01       Impact factor: 8.029

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  76 in total

Review 1.  Opportunities and challenges for using the zebrafish to study neuronal connectivity as an endpoint of developmental neurotoxicity.

Authors:  Galen W Miller; Vidya Chandrasekaran; Bianca Yaghoobi; Pamela J Lein
Journal:  Neurotoxicology       Date:  2018-04-25       Impact factor: 4.294

2.  Scanless volumetric imaging by selective access multifocal multiphoton microscopy.

Authors:  Yi Xue; Kalen P Berry; Josiah R Boivin; Christopher J Rowlands; Yu Takiguchi; Elly Nedivi; Peter T C So
Journal:  Optica       Date:  2019-01-20       Impact factor: 11.104

3.  All-optical imaging and manipulation of whole-brain neuronal activities in behaving larval zebrafish.

Authors:  Zhen-Fei Jiao; Chun-Feng Shang; Yu-Fan Wang; Zhe Yang; Chen Yang; Fu-Ning Li; Jin-Ze Xie; Jing-Wei Pan; Ling Fu; Jiu-Lin Du
Journal:  Biomed Opt Express       Date:  2018-11-12       Impact factor: 3.732

4.  High-resolution Fourier light-field microscopy for volumetric multi-color live-cell imaging.

Authors:  Xuanwen Hua; Wenhao Liu; Shu Jia
Journal:  Optica       Date:  2021-04-29       Impact factor: 11.104

5.  Design of a high-resolution light field miniscope for volumetric imaging in scattering tissue.

Authors:  Yanqin Chen; Bo Xiong; Yujia Xue; Xin Jin; Joseph Greene; Lei Tian
Journal:  Biomed Opt Express       Date:  2020-02-28       Impact factor: 3.732

Review 6.  Approaches to inferring multi-regional interactions from simultaneous population recordings: Inferring multi-regional interactions from simultaneous population recordings.

Authors:  Byungwoo Kang; Shaul Druckmann
Journal:  Curr Opin Neurobiol       Date:  2020-11-20       Impact factor: 6.627

7.  Imaging volumetric dynamics at high speed in mouse and zebrafish brain with confocal light field microscopy.

Authors:  Zhenkun Zhang; Lu Bai; Lin Cong; Peng Yu; Tianlei Zhang; Wanzhuo Shi; Funing Li; Jiulin Du; Kai Wang
Journal:  Nat Biotechnol       Date:  2020-08-10       Impact factor: 54.908

8.  Tracking microscopy enables whole-brain imaging in freely moving zebrafish.

Authors:  Olivier Thouvenin; Claire Wyart
Journal:  Nat Methods       Date:  2017-10-31       Impact factor: 28.547

Review 9.  Quantifying behavior to solve sensorimotor transformations: advances from worms and flies.

Authors:  Adam J Calhoun; Mala Murthy
Journal:  Curr Opin Neurobiol       Date:  2017-08-30       Impact factor: 6.627

10.  An experimental method to characterize the relationship between aperture image and ray directions in microscope optics.

Authors:  Mai Thi Tran; Rudolf Oldenbourg
Journal:  Microsc Res Tech       Date:  2020-10-21       Impact factor: 2.769

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