Literature DB >> 32206434

Design of a high-resolution light field miniscope for volumetric imaging in scattering tissue.

Yanqin Chen1, Bo Xiong2, Yujia Xue3, Xin Jin1,4, Joseph Greene3, Lei Tian3,5.   

Abstract

Integrating light field microscopy techniques with existing miniscope architectures has allowed for volumetric imaging of targeted brain regions in freely moving animals. However, the current design of light field miniscopes is limited by non-uniform resolution and long imaging path length. In an effort to overcome these limitations, this paper proposes an optimized Galilean-mode light field miniscope (Gali-MiniLFM), which achieves a more consistent resolution and a significantly shorter imaging path than its conventional counterparts. In addition, this paper provides a novel framework that incorporates the anticipated aberrations of the proposed Gali-MiniLFM into the point spread function (PSF) modeling. This more accurate PSF model can then be used in 3D reconstruction algorithms to further improve the resolution of the platform. Volumetric imaging in the brain necessitates the consideration of the effects of scattering. We conduct Monte Carlo simulations to demonstrate the robustness of the proposed Gali-MiniLFM for volumetric imaging in scattering tissue.
© 2020 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.

Year:  2020        PMID: 32206434      PMCID: PMC7075622          DOI: 10.1364/BOE.384673

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  27 in total

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Authors:  Michael Broxton; Logan Grosenick; Samuel Yang; Noy Cohen; Aaron Andalman; Karl Deisseroth; Marc Levoy
Journal:  Opt Express       Date:  2013-10-21       Impact factor: 3.894

2.  Fast high-resolution miniature two-photon microscopy for brain imaging in freely behaving mice.

Authors:  Weijian Zong; Runlong Wu; Mingli Li; Yanhui Hu; Yijun Li; Jinghang Li; Hao Rong; Haitao Wu; Yangyang Xu; Yang Lu; Hongbo Jia; Ming Fan; Zhuan Zhou; Yunfeng Zhang; Aimin Wang; Liangyi Chen; Heping Cheng
Journal:  Nat Methods       Date:  2017-05-29       Impact factor: 28.547

3.  Deconstruction of Corticospinal Circuits for Goal-Directed Motor Skills.

Authors:  Xuhua Wang; Yuanyuan Liu; Xinjian Li; Zicong Zhang; Hengfu Yang; Yu Zhang; Philip R Williams; Noaf S A Alwahab; Kush Kapur; Bin Yu; Yiming Zhang; Mengying Chen; Haixia Ding; Charles R Gerfen; Kuan Hong Wang; Zhigang He
Journal:  Cell       Date:  2017-09-21       Impact factor: 41.582

4.  Combined Social and Spatial Coding in a Descending Projection from the Prefrontal Cortex.

Authors:  Malavika Murugan; Hee Jae Jang; Michelle Park; Ellia M Miller; Julia Cox; Joshua P Taliaferro; Nathan F Parker; Varun Bhave; Hong Hur; Yupu Liang; Alexander R Nectow; Jonathan W Pillow; Ilana B Witten
Journal:  Cell       Date:  2017-12-07       Impact factor: 41.582

5.  Rapid whole brain imaging of neural activity in freely behaving larval zebrafish (Danio rerio).

Authors:  Lin Cong; Zeguan Wang; Yuming Chai; Wei Hang; Chunfeng Shang; Wenbin Yang; Lu Bai; Jiulin Du; Kai Wang; Quan Wen
Journal:  Elife       Date:  2017-09-20       Impact factor: 8.140

6.  Three dimensional two-photon brain imaging in freely moving mice using a miniature fiber coupled microscope with active axial-scanning.

Authors:  Baris N Ozbay; Gregory L Futia; Ming Ma; Victor M Bright; Juliet T Gopinath; Ethan G Hughes; Diego Restrepo; Emily A Gibson
Journal:  Sci Rep       Date:  2018-05-25       Impact factor: 4.379

7.  Benchmarking miniaturized microscopy against two-photon calcium imaging using single-cell orientation tuning in mouse visual cortex.

Authors:  Annet Glas; Mark Hübener; Tobias Bonhoeffer; Pieter M Goltstein
Journal:  PLoS One       Date:  2019-04-04       Impact factor: 3.240

8.  Breakdown of spatial coding and interneuron synchronization in epileptic mice.

Authors:  Tristan Shuman; Daniel Aharoni; Denise J Cai; Christopher R Lee; Spyridon Chavlis; Lucia Page-Harley; Lauren M Vetere; Yu Feng; Chen Yi Yang; Irene Mollinedo-Gajate; Lingxuan Chen; Zachary T Pennington; Jiannis Taxidis; Sergio E Flores; Kevin Cheng; Milad Javaherian; Christina C Kaba; Naina Rao; Mimi La-Vu; Ioanna Pandi; Matthew Shtrahman; Konstantin I Bakhurin; Sotiris C Masmanidis; Baljit S Khakh; Panayiota Poirazi; Alcino J Silva; Peyman Golshani
Journal:  Nat Neurosci       Date:  2020-01-06       Impact factor: 24.884

9.  Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy.

Authors:  Robert Prevedel; Young-Gyu Yoon; Maximilian Hoffmann; Nikita Pak; Gordon Wetzstein; Saul Kato; Tina Schrödel; Ramesh Raskar; Manuel Zimmer; Edward S Boyden; Alipasha Vaziri
Journal:  Nat Methods       Date:  2014-05-18       Impact factor: 28.547

10.  A shared neural ensemble links distinct contextual memories encoded close in time.

Authors:  Denise J Cai; Daniel Aharoni; Tristan Shuman; Justin Shobe; Jeremy Biane; Weilin Song; Brandon Wei; Michael Veshkini; Mimi La-Vu; Jerry Lou; Sergio E Flores; Isaac Kim; Yoshitake Sano; Miou Zhou; Karsten Baumgaertel; Ayal Lavi; Masakazu Kamata; Mark Tuszynski; Mark Mayford; Peyman Golshani; Alcino J Silva
Journal:  Nature       Date:  2016-05-23       Impact factor: 49.962

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  4 in total

1.  Diffuser-based computational imaging funduscope.

Authors:  Yunzhe Li; Gregory N McKay; Nicholas J Durr; Lei Tian
Journal:  Opt Express       Date:  2020-06-22       Impact factor: 3.894

2.  GEOMScope: Large Field-of-view 3D Lensless Microscopy with Low Computational Complexity.

Authors:  Feng Tian; Junjie Hu; Weijian Yang
Journal:  Laser Photon Rev       Date:  2021-06-27       Impact factor: 10.947

3.  Single-shot 3D wide-field fluorescence imaging with a Computational Miniature Mesoscope.

Authors:  Yujia Xue; Ian G Davison; David A Boas; Lei Tian
Journal:  Sci Adv       Date:  2020-10-21       Impact factor: 14.136

4.  Background inhibited and speed-loss-free volumetric imaging in vivo based on structured-illumination Fourier light field microscopy.

Authors:  Jiazhen Zhai; Ruheng Shi; Kuikui Fan; Lingjie Kong
Journal:  Front Neurosci       Date:  2022-09-29       Impact factor: 5.152

  4 in total

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