Literature DB >> 31506355

Structural basis for power stroke vs. Brownian ratchet mechanisms of motor proteins.

Wonmuk Hwang1,2,3,4, Martin Karplus5,6.   

Abstract

Two mechanisms have been proposed for the function of motor proteins: The power stroke and the Brownian ratchet. The former refers to generation of a large downhill free energy gradient over which the motor protein moves nearly irreversibly in making a step, whereas the latter refers to biasing or rectifying the diffusive motion of the motor. Both mechanisms require input of free energy, which generally involves the processing of an ATP (adenosine 5'-triphosphate) molecule. Recent advances in experiments that reveal the details of the stepping motion of motor proteins, together with computer simulations of atomistic structures, have provided greater insights into the mechanisms. Here, we compare the various models of the power stroke and the Brownian ratchet that have been proposed. The 2 mechanisms are not mutually exclusive, and various motor proteins employ them to different extents to perform their biological function. As examples, we discuss linear motor proteins Kinesin-1 and myosin-V, and the rotary motor F1-ATPase, all of which involve a power stroke as the essential element of their stepping mechanism.

Entities:  

Keywords:  Brownian ratchet; F1-ATPase; kinesin; myosin; power stroke

Mesh:

Substances:

Year:  2019        PMID: 31506355      PMCID: PMC6778177          DOI: 10.1073/pnas.1818589116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  116 in total

1.  The gated gait of the processive molecular motor, myosin V.

Authors:  Claudia Veigel; Fei Wang; Marc L Bartoo; James R Sellers; Justin E Molloy
Journal:  Nat Cell Biol       Date:  2002-01       Impact factor: 28.824

2.  Anatomy of F1-ATPase powered rotation.

Authors:  James L Martin; Robert Ishmukhametov; Tassilo Hornung; Zulfiqar Ahmad; Wayne D Frasch
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-24       Impact factor: 11.205

3.  Torque transmission mechanism via DELSEED loop of F1-ATPase.

Authors:  Rikiya Watanabe; Kazuma Koyasu; Huijuan You; Mizue Tanigawara; Hiroyuki Noji
Journal:  Biophys J       Date:  2015-03-10       Impact factor: 4.033

4.  Nonequilibrium Energetics of Molecular Motor Kinesin.

Authors:  Takayuki Ariga; Michio Tomishige; Daisuke Mizuno
Journal:  Phys Rev Lett       Date:  2018-11-23       Impact factor: 9.161

Review 5.  The Kinesin-1 Chemomechanical Cycle: Stepping Toward a Consensus.

Authors:  William O Hancock
Journal:  Biophys J       Date:  2016-03-29       Impact factor: 4.033

6.  Direct observation of kinesin stepping by optical trapping interferometry.

Authors:  K Svoboda; C F Schmidt; B J Schnapp; S M Block
Journal:  Nature       Date:  1993-10-21       Impact factor: 49.962

7.  Kinesin motility is driven by subdomain dynamics.

Authors:  Wonmuk Hwang; Matthew J Lang; Martin Karplus
Journal:  Elife       Date:  2017-11-07       Impact factor: 8.140

8.  A universal pathway for kinesin stepping.

Authors:  Bason E Clancy; William M Behnke-Parks; Johan O L Andreasson; Steven S Rosenfeld; Steven M Block
Journal:  Nat Struct Mol Biol       Date:  2011-08-14       Impact factor: 15.369

9.  Allosteric communication in myosin V: from small conformational changes to large directed movements.

Authors:  M Cecchini; A Houdusse; M Karplus
Journal:  PLoS Comput Biol       Date:  2008-08-15       Impact factor: 4.475

10.  How release of phosphate from mammalian F1-ATPase generates a rotary substep.

Authors:  John V Bason; Martin G Montgomery; Andrew G W Leslie; John E Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

View more
  20 in total

Review 1.  Synthetic biology approaches to dissecting linear motor protein function: towards the design and synthesis of artificial autonomous protein walkers.

Authors:  Heiner Linke; Birte Höcker; Ken'ya Furuta; Nancy R Forde; Paul M G Curmi
Journal:  Biophys Rev       Date:  2020-07-10

2.  Single-motor and multi-motor motility properties of kinesin-6 family members.

Authors:  Andrew Poulos; Breane G Budaitis; Kristen J Verhey
Journal:  Biol Open       Date:  2022-10-14       Impact factor: 2.643

Review 3.  F1FO ATP synthase molecular motor mechanisms.

Authors:  Wayne D Frasch; Zain A Bukhari; Seiga Yanagisawa
Journal:  Front Microbiol       Date:  2022-08-23       Impact factor: 6.064

4.  Insights from an information thermodynamics analysis of a synthetic molecular motor.

Authors:  Shuntaro Amano; Massimiliano Esposito; Elisabeth Kreidt; David A Leigh; Emanuele Penocchio; Benjamin M W Roberts
Journal:  Nat Chem       Date:  2022-03-17       Impact factor: 24.274

5.  Improved bounds on entropy production in living systems.

Authors:  Dominic J Skinner; Jörn Dunkel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-04       Impact factor: 11.205

6.  Escapement mechanisms: Efficient free energy transduction by reciprocally-coupled gating.

Authors:  Charles W Carter
Journal:  Proteins       Date:  2019-12-13

7.  Simulations of Phage T7 Capsid Expansion Reveal the Role of Molecular Sterics on Dynamics.

Authors:  Paul C Whitford; Wen Jiang; Philip Serwer
Journal:  Viruses       Date:  2020-11-07       Impact factor: 5.048

8.  Studies of Conformational Changes of Tubulin Induced by Interaction with Kinesin Using Atomistic Molecular Dynamics Simulations.

Authors:  Xiao-Xuan Shi; Peng-Ye Wang; Hong Chen; Ping Xie
Journal:  Int J Mol Sci       Date:  2021-06-23       Impact factor: 5.923

9.  Crystalline chitin hydrolase is a burnt-bridge Brownian motor.

Authors:  Akihiko Nakamura; Kei-Ichi Okazaki; Tadaomi Furuta; Minoru Sakurai; Jun Ando; Ryota Iino
Journal:  Biophys Physicobiol       Date:  2020-06-09

Review 10.  How Kinesin-1 Utilize the Energy of Nucleotide: The Conformational Changes and Mechanochemical Coupling in the Unidirectional Motion of Kinesin-1.

Authors:  Jingyu Qin; Hui Zhang; Yizhao Geng; Qing Ji
Journal:  Int J Mol Sci       Date:  2020-09-22       Impact factor: 5.923

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.