Literature DB >> 35301472

Insights from an information thermodynamics analysis of a synthetic molecular motor.

Shuntaro Amano1, Massimiliano Esposito2, Elisabeth Kreidt1, David A Leigh3, Emanuele Penocchio4, Benjamin M W Roberts1.   

Abstract

Information is physical, a realization that has transformed the physics of measurement and communication. However, the flow between information, energy and mechanics in chemical systems remains largely unexplored. Here we analyse a minimalist autonomous chemically driven molecular motor in terms of information thermodynamics, a framework that quantitatively relates information to other thermodynamic parameters. The treatment reveals how directional motion is generated by free energy transfer from chemical to mechanical (conformational and/or co-conformational) processes by 'energy flow' and 'information flow'. It provides a thermodynamic level of understanding of molecular motors that is general, complements previous analyses based on kinetics and has practical implications for machine design. In line with kinetic analysis, we find that power strokes do not affect the directionality of chemically driven machines. However, we find that power strokes can modulate motor velocity, the efficiency of free energy transfer and the number of fuel molecules consumed per cycle. This may help explain the role of such (co-)conformational changes in biomachines and illustrates the interplay between energy and information in chemical systems.
© 2022. The Author(s), under exclusive licence to Springer Nature Limited.

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Year:  2022        PMID: 35301472     DOI: 10.1038/s41557-022-00899-z

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.274


  38 in total

1.  Great expectations: can artificial molecular machines deliver on their promise?

Authors:  Ali Coskun; Michal Banaszak; R Dean Astumian; J Fraser Stoddart; Bartosz A Grzybowski
Journal:  Chem Soc Rev       Date:  2011-11-25       Impact factor: 54.564

Review 2.  Artificial Molecular Machines.

Authors:  Sundus Erbas-Cakmak; David A Leigh; Charlie T McTernan; Alina L Nussbaumer
Journal:  Chem Rev       Date:  2015-09-08       Impact factor: 60.622

3.  A molecular information ratchet.

Authors:  Viviana Serreli; Chin-Fa Lee; Euan R Kay; David A Leigh
Journal:  Nature       Date:  2007-02-01       Impact factor: 49.962

4.  Beyond switches: ratcheting a particle energetically uphill with a compartmentalized molecular machine.

Authors:  Manashi N Chatterjee; Euan R Kay; David A Leigh
Journal:  J Am Chem Soc       Date:  2006-03-29       Impact factor: 15.419

5.  An artificial molecular pump.

Authors:  Chuyang Cheng; Paul R McGonigal; Severin T Schneebeli; Hao Li; Nicolaas A Vermeulen; Chenfeng Ke; J Fraser Stoddart
Journal:  Nat Nanotechnol       Date:  2015-05-18       Impact factor: 39.213

6.  Light-powered autonomous and directional molecular motion of a dissipative self-assembling system.

Authors:  Giulio Ragazzon; Massimo Baroncini; Serena Silvi; Margherita Venturi; Alberto Credi
Journal:  Nat Nanotechnol       Date:  2014-11-24       Impact factor: 39.213

7.  Light-driven monodirectional molecular rotor.

Authors:  N Koumura; R W Zijlstra; R A van Delden; N Harada; B L Feringa
Journal:  Nature       Date:  1999-09-09       Impact factor: 49.962

Review 8.  The Physics and Physical Chemistry of Molecular Machines.

Authors:  R Dean Astumian; Shayantani Mukherjee; Arieh Warshel
Journal:  Chemphyschem       Date:  2016-06-15       Impact factor: 3.102

9.  Rotary and linear molecular motors driven by pulses of a chemical fuel.

Authors:  Sundus Erbas-Cakmak; Stephen D P Fielden; Ulvi Karaca; David A Leigh; Charlie T McTernan; Daniel J Tetlow; Miriam R Wilson
Journal:  Science       Date:  2017-10-20       Impact factor: 47.728

Review 10.  The Future of Molecular Machines.

Authors:  Ivan Aprahamian
Journal:  ACS Cent Sci       Date:  2020-03-03       Impact factor: 14.553

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  4 in total

Review 1.  Chemical fuels for molecular machinery.

Authors:  Stefan Borsley; Benjamin M W Roberts; David A Leigh
Journal:  Nat Chem       Date:  2022-07-01       Impact factor: 24.274

2.  Simulating a chemically fueled molecular motor with nonequilibrium molecular dynamics.

Authors:  Alex Albaugh; Todd R Gingrich
Journal:  Nat Commun       Date:  2022-04-22       Impact factor: 17.694

3.  Transamidation-Driven Molecular Pumps.

Authors:  Lorna Binks; Chong Tian; Stephen D P Fielden; Iñigo J Vitorica-Yrezabal; David A Leigh
Journal:  J Am Chem Soc       Date:  2022-08-18       Impact factor: 16.383

4.  Tuning the Force, Speed, and Efficiency of an Autonomous Chemically Fueled Information Ratchet.

Authors:  Stefan Borsley; David A Leigh; Benjamin M W Roberts; Iñigo J Vitorica-Yrezabal
Journal:  J Am Chem Soc       Date:  2022-09-08       Impact factor: 16.383

  4 in total

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